Factsheet for Bra025060.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39445	Canola	cytosol	99.54	99.54
CDX77609	Canola	cytosol, plasma membrane	99.54	99.54
Bra012576.1-P	Field mustard	cytosol	84.26	84.65
VIT_10s0003g01620.t01	Wine grape	cytosol	31.94	79.31
Zm00001d005612_P001	Maize	cytosol	39.81	77.48
Os01t0667600-01	Rice	cytosol, golgi, plasma membrane, plastid	68.98	66.52
KRG93819	Soybean	cytosol	29.17	66.32
OQU87831	Sorghum	cytosol	29.63	63.37
GSMUA_Achr7P23610_001	Banana	cytosol	50.46	61.58
OQU77614	Sorghum	cytosol	27.31	56.73
Bra017482.1-P	Field mustard	cytosol	55.09	53.6
Bra024937.1-P	Field mustard	cytosol	54.63	53.15
Bra022136.1-P	Field mustard	cytosol	54.17	52.94
Bra000290.1-P	Field mustard	cytosol	51.39	52.11
Bra004747.1-P	Field mustard	cytosol	51.39	52.11
Bra015978.1-P	Field mustard	cytosol	55.56	51.72
Bra040376.1-P	Field mustard	cytosol	50.93	51.64
Bra032453.1-P	Field mustard	cytosol	51.85	51.38
Bra016565.1-P	Field mustard	cytosol	53.7	51.33
Bra022861.1-P	Field mustard	cytosol	50.46	50.0
Bra005650.1-P	Field mustard	cytosol	49.07	48.4
Bra016699.1-P	Field mustard	cytosol, mitochondrion	25.93	44.8
Zm00001d020102_P001	Maize	cytosol	31.94	34.33
Zm00001d032569_P001	Maize	plastid	18.52	23.81

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra025060	EnsemblPlants:Bra025060.1	EnsemblPlants:Bra025060.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4E8F4	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF592	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000253FC4B	SEG:seg	:

Description

AT5G45750 (E=1e-104) AtRABA1c | AtRABA1c (Arabidopsis Rab GTPase homolog A1c); GTP binding

Coordinates

chrA06:-:24943439..24944327

Molecular Weight (calculated)

23763.0 Da

IEP (calculated)

5.383

GRAVY (calculated)

-0.271

Length

216 amino acids

Sequence
(BLAST)

001: MAGYKADDEY DYLFKVVLIG DSGVGKSNLL SRFTKNEFSL ESKSTIGVEF ATRSLNVDDK VIKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHST
101: FENVETWLKE LRNHTDPNIV VMLVGNKSDL RHLVAVQTDD AKSFAEKESL CFMETSALES TNVEDAFAQV LTQIHSIVSK KAMEAASESA NAPSRGDKIE
201: IGKDVSAVKK AGCCSN

Best Arabidopsis Sequence Match ( AT5G45750.1 )
(BLAST)

001: MAGYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTKNEFSL ESKSTIGVEF ATRSLNVDDK VIKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHST
101: FENVETWLKE LRNHTDPNIV VMLVGNKSDL RHLVAVQTED AKSFAEKESL YFMETSALEA TNVENAFAEV LTQIHHIVSK KAMEAASESA NVPSKGDKID
201: IGKDVSAVKK GGCCSN

Arabidopsis Description

RABA1CRABA1c [Source:UniProtKB/TrEMBL;Acc:A0A178UDB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.