Factsheet for Bra022861.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79430	Canola	cytosol	99.08	98.63
CDX84764	Canola	cytosol	98.17	97.72
AT2G31680.1	Thale cress	cytosol	92.2	91.78
Bra005650.1-P	Field mustard	cytosol	91.74	91.32
Bra032453.1-P	Field mustard	cytosol	83.94	83.94
Bra000290.1-P	Field mustard	cytosol	81.19	83.1
Bra004747.1-P	Field mustard	cytosol	78.44	80.28
Solyc09g097900.2.1	Tomato	cytosol	77.52	78.24
PGSC0003DMT400042789	Potato	cytosol	77.06	77.78
Os08t0525000-01	Rice	plasma membrane	76.15	76.85
Zm00001d031562_P001	Maize	cytosol	43.58	76.61
GSMUA_Achr11P...	Banana	cytosol	75.69	76.39
OQU80857	Sorghum	cytosol	74.77	75.46
TraesCS7B01G152600.1	Wheat	cytosol	74.77	75.12
TraesCS7A01G256000.1	Wheat	cytosol	74.31	74.65
TraesCS7D01G254400.1	Wheat	cytosol	74.31	74.65
HORVU7Hr1G052840.3	Barley	cytosol	74.77	74.43
Bra040376.1-P	Field mustard	cytosol	72.02	73.71
GSMUA_Achr11P...	Banana	cytosol	72.48	72.81
KRH55234	Soybean	cytosol	22.94	64.1
Bra024937.1-P	Field mustard	cytosol	61.01	59.91
Bra017482.1-P	Field mustard	cytosol	61.01	59.91
Bra022136.1-P	Field mustard	cytosol	60.55	59.73
Bra012576.1-P	Field mustard	cytosol	50.46	51.16
Bra025060.1-P	Field mustard	cytosol	50.0	50.46
Bra016565.1-P	Field mustard	cytosol	49.08	47.35
Bra015978.1-P	Field mustard	cytosol	47.71	44.83
Bra016699.1-P	Field mustard	cytosol, mitochondrion	19.27	33.6

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra022861	EnsemblPlants:Bra022861.1	EnsemblPlants:Bra022861.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4E261	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF884	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000254032D	:	:

Description

AT2G31680 (E=3e-111) AtRABA5d | AtRABA5d (Arabidopsis Rab GTPase homolog A5d); GTP binding

Coordinates

chrA03:-:7432274..7433350

Molecular Weight (calculated)

24233.4 Da

IEP (calculated)

5.405

GRAVY (calculated)

-0.401

Length

218 amino acids

Sequence
(BLAST)

001: MSSDEEGGDE YLFKIVIIGD SAVGKSNLLS RYARNEFNAH SKATIGVEFQ TQSMEIEGKD VKAQIWDTAG QERFRAVTSA YYRGAVGALV VYDISRRSTF
101: ESVARWLDEL KTHSDTTVAR MLVGNKCDLD NMRAVSVEEG KALAETQGLF FMETSALDST NVKTAFEMVI RDIYANVSRK QLNSDTHKTE LKWNSRVSLV
201: KDDNKGTQGF GFSCCSSS

Best Arabidopsis Sequence Match ( AT2G31680.1 )
(BLAST)

001: MSSDDEGGEE YLFKIVIIGD SAVGKSNLLS RYARNEFNAH SKATIGVEFQ TQNMEIEGKE VKAQIWDTAG QERFRAVTSA YYRGAVGALV VYDISRRSTF
101: ESVGRWLDEL KTHSDTTVAR MLVGNKCDLE SIRAVSVEEG KALAETEGLF FMETSALDST NVKTAFEMVI RDIYTNISRK QLNSDTYKTE LSMKNRVSLV
201: KDDNKSSTQG FGFSCCSSS

Arabidopsis Description

RABA5DRas-related protein RABA5d [Source:UniProtKB/Swiss-Prot;Acc:Q9SIP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.