CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84764	Canola	cytosol	99.09	99.09
Bra022861.1-P	Field mustard	cytosol	98.63	99.08
AT2G31680.1	Thale cress	cytosol	92.24	92.24
CDY55745	Canola	cytosol	91.78	91.78
CDX83500	Canola	cytosol	81.28	83.57
CDY42801	Canola	cytosol	80.82	83.1
CDY17945	Canola	cytosol	79.0	81.22
CDY70114	Canola	cytosol	78.54	80.75
Solyc09g097900.2.1	Tomato	cytosol	78.54	79.63
PGSC0003DMT400042789	Potato	cytosol	78.08	79.17
Zm00001d031562_P001	Maize	cytosol	44.29	78.23
Os08t0525000-01	Rice	plasma membrane	76.71	77.78
GSMUA_Achr11P...	Banana	cytosol	76.26	77.31
OQU80857	Sorghum	cytosol	75.34	76.39
CDY06181	Canola	cytosol	84.47	76.13
TraesCS7B01G152600.1	Wheat	cytosol	75.34	76.04
TraesCS7D01G254400.1	Wheat	cytosol	74.89	75.58
TraesCS7A01G256000.1	Wheat	cytosol	74.89	75.58
HORVU7Hr1G052840.3	Barley	cytosol	75.34	75.34
GSMUA_Achr11P...	Banana	cytosol	73.06	73.73
CDY65720	Canola	extracellular	42.92	72.31
CDY10008	Canola	mitochondrion	84.47	70.61
KRH55234	Soybean	cytosol	23.74	66.67
CDX77774	Canola	cytosol	61.64	61.09
CDY17729	Canola	cytosol	61.64	61.09
CDY25963	Canola	cytosol	60.73	60.73
CDY41053	Canola	cytosol	61.19	60.36
CDY40561	Canola	cytosol	60.73	60.18
CDY28925	Canola	cytosol	60.27	59.73
CDY54837	Canola	cytosol	15.07	51.56
CDY39445	Canola	cytosol	50.23	50.93
CDX77609	Canola	cytosol, plasma membrane	50.23	50.93
CDX96730	Canola	cytosol	48.86	47.35
CDX83861	Canola	cytosol	48.4	46.9
CDX83007	Canola	cytosol	23.29	45.54
CDX72997	Canola	cytosol	47.49	45.22
CDY51631	Canola	cytosol	20.09	43.56
CDX96853	Canola	mitochondrion	25.57	37.33

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:A0A078CRH3	EnsemblPlants:CDX79430	ProteinID:CDX79430	ProteinID:CDX79430.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00132161001	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF884	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0004EF0038	:

Description

BnaC03g17660D

Coordinates

chrLK031818:-:15503..16908

Molecular Weight (calculated)

24304.5 Da

IEP (calculated)

5.410

GRAVY (calculated)

-0.392

Length

219 amino acids

Sequence
(BLAST)

001: MSSDEEGGEE YLFKIVIIGD SAVGKSNLLS RYARNEFNAH SKATIGVEFQ TQSMEIEGKD VKAQIWDTAG QERFRAVTSA YYRGAVGALV VYDISRRSTF
101: ESVARWLDEL KTHSDTTVAR MLVGNKCDLD NMRAVSVEEG KALAETQGLF FMETSALDST NVKTAFEMVI RDIYANVSRK QLNSDTHKAE LKWNSRVSLV
201: KDDNKGSTQG FGFSCCSSS

Best Arabidopsis Sequence Match ( AT2G31680.1 )
(BLAST)

001: MSSDDEGGEE YLFKIVIIGD SAVGKSNLLS RYARNEFNAH SKATIGVEFQ TQNMEIEGKE VKAQIWDTAG QERFRAVTSA YYRGAVGALV VYDISRRSTF
101: ESVGRWLDEL KTHSDTTVAR MLVGNKCDLE SIRAVSVEEG KALAETEGLF FMETSALDST NVKTAFEMVI RDIYTNISRK QLNSDTYKTE LSMKNRVSLV
201: KDDNKSSTQG FGFSCCSSS

Arabidopsis Description

RABA5DRas-related protein RABA5d [Source:UniProtKB/Swiss-Prot;Acc:Q9SIP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.