CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96730	Canola	cytosol	94.69	94.69
AT1G18200.1	Thale cress	cytosol	87.17	86.03
CDX72997	Canola	cytosol	80.97	79.57
KRH48616	Soybean	cytosol	25.22	77.03
VIT_17s0000g02500.t01	Wine grape	cytosol	70.35	72.94
KRH41826	Soybean	cytosol	64.6	66.97
KRH60507	Soybean	cytosol	64.16	66.82
KRH39102	Soybean	cytosol	53.1	66.67
PGSC0003DMT400014741	Potato	cytosol	65.04	65.92
KRH48618	Soybean	cytosol	39.38	62.24
Solyc03g118820.2.1	Tomato	plastid	64.16	59.92
CDY54837	Canola	cytosol	16.81	59.38
CDY39445	Canola	cytosol	50.88	53.24
CDX77609	Canola	cytosol, plasma membrane	50.88	53.24
CDY25963	Canola	cytosol	49.56	51.14
CDY17729	Canola	cytosol	50.0	51.13
CDX77774	Canola	cytosol	50.0	51.13
CDY28925	Canola	cytosol	50.0	51.13
CDY40561	Canola	cytosol	50.0	51.13
CDY41053	Canola	cytosol	49.56	50.45
CDY70114	Canola	cytosol	47.35	50.23
CDX83500	Canola	cytosol	47.35	50.23
CDY17945	Canola	cytosol	47.35	50.23
CDY42801	Canola	cytosol	46.9	49.77
CDX79430	Canola	cytosol	46.9	48.4
CDX84764	Canola	cytosol	46.9	48.4
CDY55745	Canola	cytosol	46.46	47.95
CDX83007	Canola	cytosol	23.01	46.43
CDY06181	Canola	cytosol	48.67	45.27
CDY51631	Canola	cytosol	19.91	44.55
CDY10008	Canola	mitochondrion	48.23	41.6
CDX96853	Canola	mitochondrion	26.55	40.0
CDY65720	Canola	extracellular	17.26	30.0

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:A0A078D3A2	EnsemblPlants:CDX83861	ProteinID:CDX83861	ProteinID:CDX83861.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00139623001	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF625	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0004EED962	:

Description

BnaC08g17840D

Coordinates

chrLK031834:+:836520..837724

Molecular Weight (calculated)

25137.6 Da

IEP (calculated)

4.544

GRAVY (calculated)

-0.262

Length

226 amino acids

Sequence
(BLAST)

001: MAEDSYDEEC DYLFKAVLIG DSAVGKSNLL SRFTRDEFRL DSKPTIGVDF AYRNVCVGGK TIKAQIWDTA GQERFRAITS SYYRGALGAL LIYDITRRQT
101: FQNIKKWLSE LRGFSSPDTV VVLVGNKSDL GQSREVEEDE GKSLAELEGL YFLATSALQN QNVEEAFLSM IERIHEVLIQ KIALDNKSNV DDGDGPVVPA
201: GREVVNIDEV TATRPLSTSF SNCCLK

Best Arabidopsis Sequence Match ( AT1G18200.1 )
(BLAST)

001: MAEESYDEEC DYLFKAVLIG DSAVGKSNLL SRFSRDEFRL DSKPTIGVDF AYRNVRVGDK TIKAQIWDTA GQERFRAITS SYYRGALGAL LIYDITRRIT
101: FKNIEKWLSE LRGFSSPETV VVLVGNKSDL GQSREVEEEE GKTLAESEGL YFLETSALEN QNVEEAFLSM IGRIHEVLTQ KIVLDNRLNG DGNNESNGAV
201: VPPGKEIVNI HEVTATRPLS TSLSNCCYK

Arabidopsis Description

RABA6BRABA6b [Source:UniProtKB/TrEMBL;Acc:A0A178WEX4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.