Factsheet for PGSC0003DMT400014741

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g118820.2.1	Tomato	plastid	95.96	88.43
KRH48616	Soybean	cytosol	26.01	78.38
VIT_17s0000g02500.t01	Wine grape	cytosol	75.34	77.06
KRH41826	Soybean	cytosol	68.61	70.18
KRH60507	Soybean	cytosol	68.16	70.05
KRH39102	Soybean	cytosol	56.05	69.44
CDX72997	Canola	cytosol	69.06	66.96
KRH48618	Soybean	cytosol	42.6	66.43
Bra015978.1-P	Field mustard	cytosol	68.61	65.95
AT1G18200.1	Thale cress	cytosol	67.71	65.94
Bra016565.1-P	Field mustard	cytosol	66.37	65.49
CDX96730	Canola	cytosol	66.37	65.49
CDX83861	Canola	cytosol	65.92	65.04
AT1G73640.1	Thale cress	cytosol	66.37	63.52
PGSC0003DMT400013853	Potato	cytosol	49.33	52.38
PGSC0003DMT400042789	Potato	cytosol	49.33	50.93
PGSC0003DMT400031071	Potato	cytosol	49.33	50.69
PGSC0003DMT400021794	Potato	cytosol	48.88	48.23
PGSC0003DMT400034567	Potato	cytosol	47.98	47.56

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M1A4T3	InterPro:P-loop_NTPase	PFAM:PF00071
EnsemblPlantsGene:PGSC0003DMG400005744	PGSC:PGSC0003DMG400005744	EnsemblPlants:PGSC0003DMT400014741	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF857	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000296090E	:

Description

RAB11F [Source:PGSC_GENE;Acc:PGSC0003DMG400005744]

Coordinates

chr3:+:58322182..58324670

Molecular Weight (calculated)

25299.1 Da

IEP (calculated)

4.872

GRAVY (calculated)

-0.361

Length

223 amino acids

Sequence
(BLAST)

001: MDDSFDEECD YLFKSVLVGD SAVGKSNLLS RFARNQFQLD SKPTIGVEFA YRNIRVGDKL IKAQIWDTAG QERFRAITSS YYRGALGALL VYDITRRTTF
101: ENLRKWLHEL REYGSSDMVI VLVGNKSDLS NSSRQVNIED GQSLAQLEGL SFLETSAMEN LNVEEAFLQM INKIHEIVSQ KSLEAKLNEV TTPKSLQEGK
201: KLEIINMMDN EVTATKQNVN CCY

Best Arabidopsis Sequence Match ( AT1G73640.1 )
(BLAST)

001: MAEDTYEEEC DYLFKAVLIG DSAVGKSNLL SRFSKDEFRF DSKPTIGVEF AYRNVHVGDK IIKAQIWDTA GQERFRAITS SYYRGALGAL LIYDITRRTT
101: FDNIKKWLFE LRDFANPETV VVLVGNKSDL RQSREVEEDE GKTLAESEGL YFLETSALEN VNVEEAFLVM IGRIHEVVTQ RIASENKSNG AATPHINGNG
201: NGTVLPVGKE IVNIHEVTAT QPLLSSSSNC CFK

Arabidopsis Description

RABA6ARas-related protein RABA6a [Source:UniProtKB/Swiss-Prot;Acc:Q9C9U7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.