Factsheet for PGSC0003DMT400031071

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g098170.2.1	Tomato	plastid	99.08	99.08
KRH46865	Soybean	endoplasmic reticulum	86.64	85.84
PGSC0003DMT400042789	Potato	cytosol	84.79	85.19
KRH01822	Soybean	cytosol	85.71	84.93
PGSC0003DMT400013853	Potato	cytosol	77.42	80.0
PGSC0003DMT400021794	Potato	cytosol	63.59	61.06
PGSC0003DMT400034567	Potato	cytosol	62.21	60.0
PGSC0003DMT400014741	Potato	cytosol	50.69	49.33

Protein Annotations

EntrezGene:102581739	MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M1AV60	InterPro:P-loop_NTPase
PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400011903	PGSC:PGSC0003DMG400011903	EnsemblPlants:PGSC0003DMT400031071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF884	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002964411	RefSeq:XP_006366713.1

Description

Nt-Rab11e protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011903]

Coordinates

chr9:+:60921980..60925583

Molecular Weight (calculated)

24318.5 Da

IEP (calculated)

4.878

GRAVY (calculated)

-0.420

Length

217 amino acids

Sequence
(BLAST)

001: MDSSDDEGEE YLFKIVIIGD SAVGKSNLLT RYARNEFNLH SKATIGVEFQ TQTLEIDGKE VKAQIWDTAG QERFRAVTSA YYRGAFGALV VYDISRRTTF
101: DSIPRWLDEL KTHSDTTVAR MLVGNKCDLE NIRAVSIEEG KSLAESEGMF FMETSALDST NVNKAFEIVI REIYNSVSRK VLNSDSYKAE LSVNRVNLVN
201: DGTDGSKQKQ GYSCCSR

Best Arabidopsis Sequence Match ( AT1G05810.2 )
(BLAST)

001: MRSMSSCASL LHRLPSPPLS LSLSLQTSPT SLSRNLGKKK KTVKRAMSSD DEGREEYLFK IVVIGDSAVG KSNLLSRYAR NEFSANSKAT IGVEFQTQSM
101: EIEGKEVKAQ IWDTAGQERF RAVTSAYYRG AVGALVVYDI TRRTTFESVG RWLDELKIHS DTTVARMLVG NKCDLENIRA VSVEEGKALA EEEGLFFVET
201: SALDSTNVKT AFEMVILDIY NNVSRKQLNS DTYKDELTVN RVSLVKDDNS ASKQSSGFSC CSST

Arabidopsis Description

ARARAB GTPase homolog A5E [Source:TAIR;Acc:AT1G05810]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.