Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400003853 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07410.1 | PGSC0003DMT400003853 | AT3G06540.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g056340.2.1 | Tomato | cytosol | 98.1 | 98.1 |
| KRH46603 | Soybean | cytosol | 82.38 | 81.22 |
| VIT_07s0141g00770.t01 | Wine grape | cytosol | 80.95 | 79.07 |
| Bra040376.1-P | Field mustard | cytosol | 79.05 | 77.93 |
| PGSC0003DMT400031071 | Potato | cytosol | 80.0 | 77.42 |
| AT3G07410.1 | Thale cress | cytosol | 79.05 | 76.5 |
| PGSC0003DMT400042789 | Potato | cytosol | 76.67 | 74.54 |
| PGSC0003DMT400021794 | Potato | cytosol | 65.24 | 60.62 |
| PGSC0003DMT400034567 | Potato | cytosol | 63.81 | 59.56 |
| CDY65720 | Canola | extracellular | 36.67 | 59.23 |
| GSMUA_Achr1P13510_001 | Banana | cytosol | 32.38 | 56.2 |
| PGSC0003DMT400014741 | Potato | cytosol | 52.38 | 49.33 |
Protein Annotations
| MapMan:22.8.1.1 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 |
| GO:GO:0016787 | UniProt:M1A3E5 | InterPro:P-loop_NTPase | PFAM:PF00071 | EnsemblPlantsGene:PGSC0003DMG400005419 | PGSC:PGSC0003DMG400005419 |
| EnsemblPlants:PGSC0003DMT400013853 | PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF884 | SMART:SM00173 |
| SMART:SM00174 | SMART:SM00175 | SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase |
| TIGRFAMs:TIGR00231 | UniParc:UPI0002959C67 | : | : | : | : |
Description
RAB11G [Source:PGSC_GENE;Acc:PGSC0003DMG400005419]
Coordinates
chr9:-:21264193..21266831
Molecular Weight (calculated)
23577.7 Da
IEP (calculated)
4.692
GRAVY (calculated)
-0.348
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEQEYLFK IVVIGDSAVG KSNLLSRFAR DEFDHNSKAT IGVEFQTQVV EVDGKEIKAQ VWDTAGQERF RAVTSAYYRG AVGALIVYDI TRSTTFDNIK
101: RWLDELNTHC DTTVARMLVG NKCDLENIRD VSVEDGKNLA EEEGLFFIET SALDSTNVKT AFEIVIREIY KNLSRKVLNS DSYKAELSVN RVSLANGTDM
201: SKQKTSCCSS
101: RWLDELNTHC DTTVARMLVG NKCDLENIRD VSVEDGKNLA EEEGLFFIET SALDSTNVKT AFEIVIREIY KNLSRKVLNS DSYKAELSVN RVSLANGTDM
201: SKQKTSCCSS
001: MGKEDDRGEE YLFKIVLIGD SAVGKSNLLS RFSRDEFDTN SKATIGVEFQ TQLVEIEGKE VKAQIWDTAG QERFRAVTSA YYRGAFGALI VYDITRGDTF
101: ESVKRWLQEL NTHCDTAVAQ MLVGNKCDLE DIRAVSVEEG KALAEEEGLF FMETSALDAT NVDKAFEIVI REIFNNVSRK LLNSDAYKAE LSVNRVSLVN
201: NQDGSESSWR NPSCCSR
101: ESVKRWLQEL NTHCDTAVAQ MLVGNKCDLE DIRAVSVEEG KALAEEEGLF FMETSALDAT NVDKAFEIVI REIFNNVSRK LLNSDAYKAE LSVNRVSLVN
201: NQDGSESSWR NPSCCSR
Arabidopsis Description
RABA5BRas-related protein RABA5b [Source:UniProtKB/Swiss-Prot;Acc:Q9SRS5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.