CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH05675
KRH28917
KRH76543

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07410.1	KRH05675	AT3G06540.1	21798944
AT3G07410.1	KRH28917	AT3G06540.1	21798944
AT3G07410.1	KRH76543	AT3G06540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013853	Potato	cytosol	81.22	82.38
VIT_07s0141g00770.t01	Wine grape	cytosol	83.1	82.33
Solyc09g056340.2.1	Tomato	cytosol	80.75	81.9
Bra040376.1-P	Field mustard	cytosol	80.28	80.28
KRH01822	Soybean	cytosol	82.16	79.91
KRH46865	Soybean	endoplasmic reticulum	82.16	79.91
AT3G07410.1	Thale cress	cytosol	81.22	79.72
KRH55234	Soybean	cytosol	27.7	75.64
KRH34233	Soybean	cytosol	66.2	63.23
KRG92561	Soybean	cytosol	66.67	62.83
KRH48616	Soybean	cytosol	20.66	59.46
CDY65720	Canola	extracellular	34.74	56.92
GSMUA_Achr1P13510_001	Banana	cytosol	30.99	54.55
KRH41826	Soybean	cytosol	53.05	51.83
KRH39102	Soybean	cytosol	43.19	51.11
KRH60507	Soybean	cytosol	51.64	50.69
KRG93819	Soybean	cytosol	22.54	50.53
KRH48618	Soybean	cytosol	29.58	44.06

Protein Annotations

EntrezGene:100808333	MapMan:22.8.1.1	Gene3D:3.40.50.300	EMBL:ACUP02005351	UniProt:G3ECQ7	EnsemblPlantsGene:GLYMA_08G345300
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0016787	EMBL:HQ711937	EnsemblPlants:KRH46603	ProteinID:KRH46603	ProteinID:KRH46603.1	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF884	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI00022A39B0	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:46024969..46028796

Molecular Weight (calculated)

23562.7 Da

IEP (calculated)

4.668

GRAVY (calculated)

-0.331

Length

213 amino acids

Sequence
(BLAST)

001: MAENGEGGEE YLFKIVLIGD SAVGKSNLLS RFARNEFDSN SKATIGVEFQ TQLVEIDGKE IKAQIWDTAG QERFRAVTSA YYRGAVGALV VYDISRRGTF
101: DSIKRWLQEL TTQNDSTVAR MLVGNKCDLE NIREVSTEEG KSLAEEEGLF FMETSALDAT NVQTAFEIVI REIYNNISRK VLNSDSYKAE LSVNRVSLVN
201: GAGSKQGPSC CSR

Best Arabidopsis Sequence Match ( AT3G07410.1 )
(BLAST)

001: MGKEDDRGEE YLFKIVLIGD SAVGKSNLLS RFSRDEFDTN SKATIGVEFQ TQLVEIEGKE VKAQIWDTAG QERFRAVTSA YYRGAFGALI VYDITRGDTF
101: ESVKRWLQEL NTHCDTAVAQ MLVGNKCDLE DIRAVSVEEG KALAEEEGLF FMETSALDAT NVDKAFEIVI REIFNNVSRK LLNSDAYKAE LSVNRVSLVN
201: NQDGSESSWR NPSCCSR

Arabidopsis Description

RABA5BRas-related protein RABA5b [Source:UniProtKB/Swiss-Prot;Acc:Q9SRS5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.