CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY05274
CDY24684
CDY34947

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07410.1	CDY05274	AT3G06540.1	21798944
AT3G07410.1	CDY24684	AT3G06540.1	21798944
AT3G07410.1	CDY34947	AT3G06540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P13510_001	Banana	cytosol	47.69	51.24
CDY55745	Canola	cytosol	76.92	45.66
CDX79430	Canola	cytosol	72.31	42.92
CDX84764	Canola	cytosol	72.31	42.92
CDX83500	Canola	cytosol	63.85	38.97
CDY42801	Canola	cytosol	63.08	38.5
CDY17945	Canola	cytosol	62.31	38.03
CDY70114	Canola	cytosol	61.54	37.56
Solyc09g056340.2.1	Tomato	cytosol	60.0	37.14
PGSC0003DMT400013853	Potato	cytosol	59.23	36.67
Bra040376.1-P	Field mustard	cytosol	58.46	35.68
CDY06181	Canola	cytosol	66.15	35.39
VIT_07s0141g00770.t01	Wine grape	cytosol	58.46	35.35
AT3G07410.1	Thale cress	cytosol	58.46	35.02
KRH46603	Soybean	cytosol	56.92	34.74
CDY10008	Canola	mitochondrion	66.15	32.82
CDY17729	Canola	cytosol	43.08	25.34
CDY28925	Canola	cytosol	43.08	25.34
CDY40561	Canola	cytosol	43.08	25.34
CDX77774	Canola	cytosol	43.08	25.34
CDY41053	Canola	cytosol	43.08	25.23
CDY25963	Canola	cytosol	42.31	25.11
CDY39445	Canola	cytosol	33.85	20.37
CDX77609	Canola	cytosol, plasma membrane	33.85	20.37
CDX96730	Canola	cytosol	31.54	18.14
CDX83861	Canola	cytosol	30.0	17.26
CDX72997	Canola	cytosol	29.23	16.52
CDX96853	Canola	mitochondrion	14.62	12.67
CDX83007	Canola	cytosol	7.69	8.93
CDY54837	Canola	cytosol	3.08	6.25
CDY51631	Canola	cytosol	3.08	3.96

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078JGV2	UniProt:A0A078JGV2	EnsemblPlants:CDY65720	ProteinID:CDY65720
ProteinID:CDY65720.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00048076001	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF884	SMART:SM00173	SMART:SM00175	SUPFAM:SSF52540
SignalP:SignalP-noTM	InterPro:Small_GTPase	UniParc:UPI0004EE20CC	:	:	:

Description

BnaCnng48450DBnaCnng48450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGV2]

Coordinates

chrLK034915:+:2203..2595

Molecular Weight (calculated)

14577.2 Da

IEP (calculated)

5.142

GRAVY (calculated)

-0.191

Length

130 amino acids

Sequence
(BLAST)

001: MFSFDLNVFW FGKSFLCRLF WAAHSDTTVA TMLVGNKCDL ESMRAVSVEE GKALAETQGL FFMETSALDS TNVKTAFEMV IRDIYTNVSR KQLNSDTYKT
101: QLSSNNRESL VKDDNKGSNQ VFGFSCCSSS

Best Arabidopsis Sequence Match ( AT1G05810.1 )
(BLAST)

001: MSSDDEGREE YLFKIVVIGD SAVGKSNLLS RYARNEFSAN SKATIGVEFQ TQSMEIEGKE VKAQIWDTAG QERFRAVTSA YYRGAVGALV VYDITRRTTF
101: ESVGRWLDEL KIHSDTTVAR MLVGNKCDLE NIRAVSVEEG KALAEEEGLF FVETSALDST NVKTAFEMVI LDIYNNVSRK QLNSDTYKDE LTVNRVSLVK
201: DDNSASKQSS GFSCCSST

Arabidopsis Description

ARARAB GTPase homolog A5E [Source:TAIR;Acc:AT1G05810]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.