Factsheet for Bra040376.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra029586.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07410.1	Bra029586.1-P	AT3G06540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G07410.1	Thale cress	cytosol	95.77	94.01
KRH46603	Soybean	cytosol	80.28	80.28
Solyc09g056340.2.1	Tomato	cytosol	77.93	79.05
PGSC0003DMT400013853	Potato	cytosol	77.93	79.05
VIT_07s0141g00770.t01	Wine grape	cytosol	78.87	78.14
Bra000290.1-P	Field mustard	cytosol	77.0	77.0
Bra004747.1-P	Field mustard	cytosol	75.12	75.12
Bra005650.1-P	Field mustard	cytosol	75.12	73.06
Bra022861.1-P	Field mustard	cytosol	73.71	72.02
Bra032453.1-P	Field mustard	cytosol	73.71	72.02
Bra022136.1-P	Field mustard	cytosol	63.85	61.54
Bra024937.1-P	Field mustard	cytosol	63.38	60.81
Bra017482.1-P	Field mustard	cytosol	62.91	60.36
CDY65720	Canola	extracellular	35.68	58.46
Bra012576.1-P	Field mustard	cytosol	52.58	52.09
GSMUA_Achr1P13510_001	Banana	cytosol	29.11	51.24
Bra025060.1-P	Field mustard	cytosol	51.64	50.93
Bra016565.1-P	Field mustard	cytosol	53.05	50.0
Bra015978.1-P	Field mustard	cytosol	52.58	48.28
Bra016699.1-P	Field mustard	cytosol, mitochondrion	21.13	36.0

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra040376	EnsemblPlants:Bra040376.1	EnsemblPlants:Bra040376.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	GO:GO:0016787	UniProt:M4FGZ8	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF884	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI0002544924	SEG:seg	:	:	:

Description

AT3G07410 (E=2e-101) AtRABA5b | AtRABA5b (Arabidopsis Rab GTPase homolog A5b); GTP binding

Coordinates

chrA01:+:27935166..27936356

Molecular Weight (calculated)

23654.7 Da

IEP (calculated)

4.529

GRAVY (calculated)

-0.278

Length

213 amino acids

Sequence
(BLAST)

001: MGKEDNQGEE YLFKIVLIGD SAVGKSNLLS RFSRDEFDTN SKATIGVEFQ TQLVEIEGKE VKAQIWDTAG QERFRAVTSA YYRGAFGALI VYDITRSSTF
101: ESVKRWLQEL NTHCDTAVAQ MLVGNKCDLE DIRAVSVEEG KALAEEEGLF FMETSALDAT NVDKAFEIVI REIFSNVSRK LLNSDAYKAQ LSVNRVSLVN
201: NGDGTQSSSC CSR

Best Arabidopsis Sequence Match ( AT3G07410.1 )
(BLAST)

001: MGKEDDRGEE YLFKIVLIGD SAVGKSNLLS RFSRDEFDTN SKATIGVEFQ TQLVEIEGKE VKAQIWDTAG QERFRAVTSA YYRGAFGALI VYDITRGDTF
101: ESVKRWLQEL NTHCDTAVAQ MLVGNKCDLE DIRAVSVEEG KALAEEEGLF FMETSALDAT NVDKAFEIVI REIFNNVSRK LLNSDAYKAE LSVNRVSLVN
201: NQDGSESSWR NPSCCSR

Arabidopsis Description

RABA5BRas-related protein RABA5b [Source:UniProtKB/Swiss-Prot;Acc:Q9SRS5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.