Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr6P03390_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07410.1 | GSMUA_Achr6P03390_001 | AT3G06540.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65720 | Canola | extracellular | 51.24 | 47.69 |
| GSMUA_Achr8P28380_001 | Banana | cytosol | 59.5 | 38.3 |
| GSMUA_Achr2P06080_001 | Banana | plasma membrane | 62.81 | 35.51 |
| PGSC0003DMT400013853 | Potato | cytosol | 56.2 | 32.38 |
| GSMUA_Achr11P... | Banana | cytosol | 57.02 | 31.94 |
| Solyc09g056340.2.1 | Tomato | cytosol | 55.37 | 31.9 |
| KRH46603 | Soybean | cytosol | 54.55 | 30.99 |
| GSMUA_Achr11P... | Banana | cytosol | 55.37 | 30.88 |
| VIT_07s0141g00770.t01 | Wine grape | cytosol | 52.89 | 29.77 |
| AT3G07410.1 | Thale cress | cytosol | 52.89 | 29.49 |
| Bra040376.1-P | Field mustard | cytosol | 51.24 | 29.11 |
| GSMUA_Achr5P06170_001 | Banana | cytosol | 36.36 | 26.04 |
| GSMUA_Achr6P00700_001 | Banana | cytosol | 37.19 | 20.45 |
| GSMUA_Achr2P15860_001 | Banana | cytosol | 37.19 | 20.09 |
| GSMUA_Achr7P23610_001 | Banana | cytosol | 20.66 | 14.12 |
| GSMUA_Achr2P22260_001 | Banana | cytosol | 2.48 | 2.91 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 |
| GO:GO:0016787 | EnsemblPlantsGene:GSMUA_Achr1G13510_001 | EnsemblPlants:GSMUA_Achr1P13510_001 | EnsemblPlants:GSMUA_Achr1T13510_001 | UniProt:M0RZK9 | InterPro:P-loop_NTPase |
| PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF884 | SMART:SM00175 |
| SUPFAM:SSF52540 | InterPro:Small_GTPase | UniParc:UPI000294DF15 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G13510_001]
Coordinates
chr1:+:10308951..10309316
Molecular Weight (calculated)
13326.7 Da
IEP (calculated)
4.711
GRAVY (calculated)
-0.344
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MHLNSDSKHD AVHSDATVAK MLVDNKCDLE NIRNISVDEG KSSAEAEGLF LIETSALDST NVKKAFEIVI EDMYNNLSRK ALNSDSYKPE LSLNSVSLTG
101: MGMMRQSRLQ ASSPAAETIF W
101: MGMMRQSRLQ ASSPAAETIF W
001: MSSDDEGREE YLFKIVVIGD SAVGKSNLLS RYARNEFSAN SKATIGVEFQ TQSMEIEGKE VKAQIWDTAG QERFRAVTSA YYRGAVGALV VYDITRRTTF
101: ESVGRWLDEL KIHSDTTVAR MLVGNKCDLE NIRAVSVEEG KALAEEEGLF FVETSALDST NVKTAFEMVI LDIYNNVSRK QLNSDTYKDE LTVNRVSLVK
201: DDNSASKQSS GFSCCSST
101: ESVGRWLDEL KIHSDTTVAR MLVGNKCDLE NIRAVSVEEG KALAEEEGLF FVETSALDST NVKTAFEMVI LDIYNNVSRK QLNSDTYKDE LTVNRVSLVK
201: DDNSASKQSS GFSCCSST
Arabidopsis Description
ARARAB GTPase homolog A5E [Source:TAIR;Acc:AT1G05810]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.