Factsheet for GSMUA_Achr2P06080_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P28380_001	Banana	cytosol	77.1	87.77
VIT_05s0062g00840.t01	Wine grape	cytosol	85.51	85.12
GSMUA_Achr11P...	Banana	cytosol	82.71	81.94
GSMUA_Achr11P...	Banana	cytosol	80.84	79.72
GSMUA_Achr2P22260_001	Banana	cytosol	31.31	65.05
GSMUA_Achr1P13510_001	Banana	cytosol	35.51	62.81
GSMUA_Achr6P00700_001	Banana	cytosol	64.49	62.73
GSMUA_Achr2P15860_001	Banana	cytosol	64.49	61.61
GSMUA_Achr5P06170_001	Banana	cytosol	47.2	59.76
GSMUA_Achr7P23610_001	Banana	cytosol	40.65	49.15

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr2G06080_001	EnsemblPlants:GSMUA_Achr2P06080_001	EnsemblPlants:GSMUA_Achr2T06080_001
UniProt:M0S5J9	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF884	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000294D823	:	:

Description

Ras-related protein ARA-4 [Source:GMGC_GENE;Acc:GSMUA_Achr2G06080_001]

Coordinates

chr2:+:10990281..10993480

Molecular Weight (calculated)

23845.0 Da

IEP (calculated)

4.997

GRAVY (calculated)

-0.367

Length

214 amino acids

Sequence
(BLAST)

001: MEEGEDGEQY LFKIVIIGDS AVGKSNLLSR YARNEFNLHS KATIGVEFQT QSVVIDGKEV KAQIWDTAGQ ERFRAVTSAY YRGAVGALVV YDISRRTTFD
101: SVPRWLQELE THSDTTVAKM LVGNKCDLDN IRNISVEEGK SLAEAEGLFF IETSALDSTN VKKAFEIVIR EIYNNVSRKV LNSDSYKSEL SLNRVSLTSN
201: GSDETKQTSS KTCC

Best Arabidopsis Sequence Match ( AT2G43130.1 )
(BLAST)

001: MSDDDERGEE YLFKIVIIGD SAVGKSNLLT RYARNEFNPN SKATIGVEFQ TQSMLIDGKE VKAQIWDTAG QERFRAVTSA YYRGAVGALV VYDITRSSTF
101: ENVGRWLDEL NTHSDTTVAK MLIGNKCDLE SIRAVSVEEG KSLAESEGLF FMETSALDST NVKTAFEMVI REIYSNISRK QLNSDSYKEE LTVNRVSLVK
201: NENEGTKTFS CCSR

Arabidopsis Description

RABA5CRas-related protein RABA5c [Source:UniProtKB/Swiss-Prot;Acc:P28187]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.