Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 5
- golgi 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g050030.1.1 | Tomato | cytosol | 49.51 | 64.56 |
| Zm00001d048223_P001 | Maize | cytosol | 64.08 | 58.93 |
| VIT_00s0625g00030.t01 | Wine grape | cytosol | 60.19 | 57.41 |
| Zm00001d028003_P001 | Maize | cytosol | 67.96 | 43.75 |
| GSMUA_Achr7P23610_001 | Banana | cytosol | 66.02 | 38.42 |
| Bra016699.1-P | Field mustard | cytosol, mitochondrion | 41.75 | 34.4 |
| GSMUA_Achr6P00700_001 | Banana | cytosol | 67.96 | 31.82 |
| GSMUA_Achr11P... | Banana | cytosol | 66.02 | 31.48 |
| GSMUA_Achr2P06080_001 | Banana | plasma membrane | 65.05 | 31.31 |
| GSMUA_Achr2P15860_001 | Banana | cytosol | 66.02 | 30.36 |
| GSMUA_Achr11P... | Banana | cytosol | 63.11 | 29.95 |
| CDX96853 | Canola | mitochondrion | 40.78 | 28.0 |
| GSMUA_Achr8P28380_001 | Banana | cytosol | 49.51 | 27.13 |
| GSMUA_Achr5P06170_001 | Banana | cytosol | 34.95 | 21.3 |
| GSMUA_Achr1P13510_001 | Banana | cytosol | 2.91 | 2.48 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | EnsemblPlantsGene:GSMUA_Achr2G22260_001 | EnsemblPlants:GSMUA_Achr2P22260_001 | EnsemblPlants:GSMUA_Achr2T22260_001 |
| UniProt:M0SA67 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 |
| PANTHER:PTHR24073:SF647 | SMART:SM00175 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 |
| UniParc:UPI0002956A78 | : | : | : | : | : |
Description
Ras-related protein Rab11C [Source:GMGC_GENE;Acc:GSMUA_Achr2G22260_001]
Coordinates
chr2:+:21396044..21397982
Molecular Weight (calculated)
11521.8 Da
IEP (calculated)
9.027
GRAVY (calculated)
-0.008
Length
103 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGRDKIDY VFKVVLIGDS AVGKSQLLAR FEFSLDSKAT IGVEFQTRTL IIQHKSVKAQ IWDTAGQESY RAVTSAYYRG AVGASLVYDI TKCQSFDHIP
101: WWL
101: WWL
001: MNEEMSGESP ENNKHVKKPT MPEKIDYVFK VVVIGDSAVG KTQLLSRFTH NEFCYDSKST IGVEFQTRTI TLRGKLVKAQ IWDTAGQERY RAVTSAYYRG
101: ALGAMVVYDI TKRLSFDHVA RWVEELRAHA DDSAVIMLVG NKADLSVGKR AVPTEDAVEF AETQRLFFSE VSALSGGNVD EAFFRLLEEI FSRVVVSRKA
201: MESDGGATVK LDGSRIDVIS GSDLETSNIK EQASCSC
101: ALGAMVVYDI TKRLSFDHVA RWVEELRAHA DDSAVIMLVG NKADLSVGKR AVPTEDAVEF AETQRLFFSE VSALSGGNVD EAFFRLLEEI FSRVVVSRKA
201: MESDGGATVK LDGSRIDVIS GSDLETSNIK EQASCSC
Arabidopsis Description
RABA3RABA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3F7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.