Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P22260_001 | Banana | cytosol | 57.41 | 60.19 |
| Zm00001d048223_P001 | Maize | cytosol | 61.11 | 58.93 |
| VIT_10s0003g01620.t01 | Wine grape | cytosol | 44.44 | 55.17 |
| Zm00001d028003_P001 | Maize | cytosol | 62.96 | 42.5 |
| Solyc10g050030.1.1 | Tomato | cytosol | 30.56 | 41.77 |
| VIT_05s0062g00840.t01 | Wine grape | cytosol | 51.85 | 26.05 |
| VIT_07s0141g00770.t01 | Wine grape | cytosol | 50.93 | 25.58 |
| Bra016699.1-P | Field mustard | cytosol, mitochondrion | 28.7 | 24.8 |
| VIT_17s0000g02500.t01 | Wine grape | cytosol | 50.0 | 24.77 |
| CDX96853 | Canola | mitochondrion | 33.33 | 24.0 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | ProteinID:CCB50170 | ProteinID:CCB50170.1 | UniProt:F6HD75 | EMBL:FN595556 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0016787 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 |
| PANTHER:PTHR24073:SF647 | SMART:SM00175 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 |
| UniParc:UPI000210A705 | ArrayExpress:VIT_00s0625g00030 | EnsemblPlantsGene:VIT_00s0625g00030 | EnsemblPlants:VIT_00s0625g00030.t01 | : | : |
Description
No Description!
Coordinates
chrUn:+:33162543..33163375
Molecular Weight (calculated)
11839.2 Da
IEP (calculated)
8.884
GRAVY (calculated)
0.011
Length
108 amino acids
Sequence
(BLAST)
(BLAST)
001: MASGGGYGDS SQKIDYVFKV VLIGDSAVGK SQILARFARN EFSLDSKATI GVEFQTRTLV IQHKSVKAQI WDTAGQERSK SCCQINILVK QEKGGSLLDF
101: GIAFCFWL
101: GIAFCFWL
001: MTSGGGYGDP SQKIDYVFKV VLIGDSAVGK SQILARYARD EFSLDSKATI GVEFQTRTLV IDHKSVKAQI WDTAGQERYR AVTSAYYRGA VGAMLVYDIT
101: RRQTFDHIPR WLEELRAHAD KNIVIILIGN KSDLVDQRAI PTEDAKEFAE KEGLFFLETS AFNATNVESA FSTVLTEIFN IVNKKSLAAS EDQENGNPGS
201: LAGKKIDIVP GPGQVIPNKS NMCCNS
101: RRQTFDHIPR WLEELRAHAD KNIVIILIGN KSDLVDQRAI PTEDAKEFAE KEGLFFLETS AFNATNVESA FSTVLTEIFN IVNKKSLAAS EDQENGNPGS
201: LAGKKIDIVP GPGQVIPNKS NMCCNS
Arabidopsis Description
RABA4ARABA4a [Source:UniProtKB/TrEMBL;Acc:A0A178UKD0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.