Factsheet for VIT_07s0141g00770.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0044g00070.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07410.1	VIT_04s0044g00070.t01	AT3G06540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0062g00840.t01	Wine grape	cytosol	83.26	83.26
KRH46603	Soybean	cytosol	82.33	83.1
Solyc09g056340.2.1	Tomato	cytosol	80.0	81.9
PGSC0003DMT400013853	Potato	cytosol	79.07	80.95
Bra040376.1-P	Field mustard	cytosol	78.14	78.87
AT3G07410.1	Thale cress	cytosol	78.6	77.88
CDY65720	Canola	extracellular	35.35	58.46
VIT_10s0003g01620.t01	Wine grape	cytosol	22.79	56.32
GSMUA_Achr1P13510_001	Banana	cytosol	29.77	52.89
VIT_17s0000g02500.t01	Wine grape	cytosol	52.56	51.83
VIT_00s0625g00030.t01	Wine grape	cytosol	25.58	50.93

Protein Annotations

EntrezGene:100254995	wikigene:100254995	MapMan:22.8.1.1	Gene3D:3.40.50.300	UniProt:A5B3S9	EMBL:AM445624
ProteinID:CAN69655	ProteinID:CAN69655.1	ProteinID:CBI18743	ProteinID:CBI18743.3	EMBL:FN594991	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
EntrezGene:LOC100254995	wikigene:LOC100254995	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF884	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGR:TC63525	TIGRFAMs:TIGR00231	UniParc:UPI0001520059
ArrayExpress:VIT_07s0141g00770	EnsemblPlantsGene:VIT_07s0141g00770	EnsemblPlants:VIT_07s0141g00770.t01	unigene:Vvi.12699	RefSeq:XP_002263362	RefSeq:XP_002263362.1

Description

No Description!

Coordinates

chr7_random:+:436004..438765

Molecular Weight (calculated)

24051.4 Da

IEP (calculated)

5.168

GRAVY (calculated)

-0.256

Length

215 amino acids

Sequence
(BLAST)

001: MGEEGEEYLF KIVIIGDSAV GKSNLLSRYA RNEFDLHSKA TIGVEFQTQC VDIDGKEVKA QIWDTAGQER FRAVTSAYYR GAFGALLVYD ISRRSTFESI
101: ARWLDELKIH CDTTVARMLV GNKCDLENIR DVSTEEGKNL AEAEGLFFME TSALDATNVK TAFEMVIREI FNNVSRKVLH SDSYKAELSV NRVSLVNNGA
201: AASKQNQIYS SCCSR

Best Arabidopsis Sequence Match ( AT1G05810.2 )
(BLAST)

001: MRSMSSCASL LHRLPSPPLS LSLSLQTSPT SLSRNLGKKK KTVKRAMSSD DEGREEYLFK IVVIGDSAVG KSNLLSRYAR NEFSANSKAT IGVEFQTQSM
101: EIEGKEVKAQ IWDTAGQERF RAVTSAYYRG AVGALVVYDI TRRTTFESVG RWLDELKIHS DTTVARMLVG NKCDLENIRA VSVEEGKALA EEEGLFFVET
201: SALDSTNVKT AFEMVILDIY NNVSRKQLNS DTYKDELTVN RVSLVKDDNS ASKQSSGFSC CSST

Arabidopsis Description

ARARAB GTPase homolog A5E [Source:TAIR;Acc:AT1G05810]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.