Factsheet for VIT_04s0044g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
cytosol 1
peroxisome 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76543	Soybean	cytosol, peroxisome, plasma membrane	57.19	57.5
Solyc02g082730.2.1	Tomato	extracellular	56.65	57.07
KRH28917	Soybean	cytosol, peroxisome, plastid	56.12	56.62
PGSC0003DMT400003853	Potato	peroxisome	55.76	56.06
AT3G06540.1	Thale cress	cytosol	55.58	54.88
CDY05274	Canola	plastid	53.42	52.94
CDY24684	Canola	cytosol	53.24	52.3
Bra029586.1-P	Field mustard	peroxisome	53.06	52.03
CDY34947	Canola	cytosol, plastid, vacuole	51.26	52.01
Zm00001d004622_P001	Maize	cytosol	6.47	50.0
KRH05675	Soybean	extracellular, vacuole	17.63	49.25
Zm00001d050984_P001	Maize	cytosol, mitochondrion, peroxisome	6.29	48.61
Os01t0269100-01	Rice	plasma membrane	28.06	48.3
GSMUA_Achr6P03390_001	Banana	peroxisome	41.19	46.54
TraesCS3A01G185700.1	Wheat	cytosol	45.86	45.54
HORVU3Hr1G038200.3	Barley	cytosol, nucleus, peroxisome	45.86	45.45
TraesCS3D01G189700.1	Wheat	cytosol, nucleus, peroxisome	45.5	45.18
KXG32246	Sorghum	cytosol, nucleus, peroxisome	45.32	45.08
TraesCS3B01G215300.1	Wheat	cytosol, nucleus, peroxisome	45.32	45.0
Zm00001d040408_P003	Maize	peroxisome	44.42	44.5
Zm00001d008269_P001	Maize	peroxisome	43.7	43.63
Zm00001d009201_P001	Maize	cytosol	11.15	36.69
VIT_05s0094g01550.t01	Wine grape	cytosol	20.5	25.68
VIT_03s0017g00490.t01	Wine grape	cytosol	14.93	22.74
VIT_00s2317g00010.t01	Wine grape	cytosol	2.88	11.35
VIT_00s0313g00050.t01	Wine grape	cytosol, nucleus	16.91	5.05

Protein Annotations

Gene3D:1.10.405.10	EntrezGene:100262556	wikigene:100262556	MapMan:22.8.4.1.3	Gene3D:3.30.519.10	Gene3D:3.50.50.60
ProteinID:CBI37649	ProteinID:CBI37649.3	UniProt:D7U473	InterPro:FAD/NAD-bd_sf	EMBL:FN596506	InterPro:GDP_dissociation_inhibitor
GO:GO:0003674	GO:GO:0005092	GO:GO:0005096	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005968	GO:GO:0006464
GO:GO:0006810	GO:GO:0006886	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0017137	GO:GO:0018344	GO:GO:0019538
GO:GO:0030234	GO:GO:0043547	GO:GO:0050790	GO:GO:2000541	InterPro:IPR036188	EntrezGene:LOC100262556
wikigene:LOC100262556	PFAM:PF00996	PIRSF:PIRSF016550	PRINTS:PR00891	PANTHER:PTHR11787	PANTHER:PTHR11787:SF23
InterPro:Rab_escort	SUPFAM:SSF51905	SUPFAM:SSF54373	TIGR:TC59332	UniParc:UPI0001BE4EC6	ArrayExpress:VIT_04s0044g00070
EnsemblPlantsGene:VIT_04s0044g00070	EnsemblPlants:VIT_04s0044g00070.t01	unigene:Vvi.11547	RefSeq:XP_002273131	RefSeq:XP_002273131.2	RefSeq:XP_019075115.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:20752277..20765631

Molecular Weight (calculated)

60754.2 Da

IEP (calculated)

4.526

GRAVY (calculated)

-0.060

Length

556 amino acids

Sequence
(BLAST)

001: MDETPSYPPI EPTDFDLIVV GTGLPQSVIA AAASSAGKSV LHLDSNSFYG SHFSSLNLDE FSSFLTSQSA VHSSHPNPPS SVAADAAEYV ALDLKTRPMY
101: SDVEITSHSS DPVEHSRKFN LDVSGPRVLF CADAAVDLML KSGASQYLEF KSIDASFVCD ADGRFSTVPD SRAAIFKDRS LSLTEKNQLM RFFKLIQGHL
201: AASDEAENDS NARISEDDLE SPFVEFLNKM RLPPKIKSMI LYAIAMADYD QDSIEVCKDV LDTKIGIDRL ALYHSSVGRF PNALGALIYP IYGQGELTQA
301: FCRRAAVKGC IYVLRMPVIA LLMEKESGHC KGVRLASGQD IFSQKLLVDP SFIVPVPVAP SQPDCMPESS QVINLVDAKQ KVARGICIMK SSLKPDVSNF
401: VFVYPPRSLY PEQAMAIRAV QIGSNLGVCP SGMFVLYLST LCNDATQGKE LLQAAIKSLF TLPVSGNPEN SSSVHSENME EVKPTLLWSA LYTQELVMGS
501: FESISSTSMP DGNLNYNVLL DATVKLFHQM YPQEEFFPET TSPENVEDDD GLSLES

Best Arabidopsis Sequence Match ( AT3G06540.1 )
(BLAST)

001: MIDIPPYPPL DPSNYDLIVV GTGVSESVLA AAASSSGSSV LHLDPNPFYG SHFASLSLPD LTSFLHSNSV SPPPSPSSPP LPPSNNHDFI SVDLVNRSLY
101: SSVEISSFES EILEEHSRRF NVDLAGPRVV FCADESINLM LKSGANNYVE FKSIDASFVG DSSGELRNVP DSRAAIFKDK SLTLLEKNQL MKFFKLVQSH
201: LASSTEKDDS TTVKISEEDM ESPFVDFLSK MRLPPKIKSI ILYAIAMLDY DQDNTETCRH LLKTKEGIDR LALYITSMGR FSNALGALIY PIYGQGELPQ
301: AFCRRAAVKG CIYVLRMPIT ALLLDKETGG YKGVRLASGQ EIFSQKLILD PCVTVGLESL SSLTDQQNET LSVLVPKSMI NKEKIARGVC VIRGSVKANV
401: SNALVVYPPK SLFPEQLTAI RVLQLGSGLA VCPADMHVLY LSTLCDNDDQ GIKALLSAMS NLISLPVPEN RQSDSVVEND TSETKPILLW RALYVQELVK
501: GEFGGTISSM PSPDGNLNYN EIVESAVKLY EKLMGSEELF KEETSPAENT TEEENDGGVE IED

Arabidopsis Description

REPRab escort protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LLD4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.