Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, peroxisome, cytosol
Predictor Summary:
Predictor Summary:
- peroxisome 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d022251_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G06540.1 | Zm00001d022251_P002 | AT5G47520.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d004622_P001 | Maize | cytosol | 97.22 | 97.22 |
| Zm00001d009201_P001 | Maize | cytosol | 56.94 | 24.26 |
| Zm00001d008269_P001 | Maize | peroxisome | 75.0 | 9.69 |
| Zm00001d040408_P003 | Maize | peroxisome | 70.83 | 9.19 |
| GSMUA_Achr6P03390_001 | Banana | peroxisome | 56.94 | 8.33 |
| Zm00001d016318_P002 | Maize | cytosol | 27.78 | 7.07 |
| CDY05274 | Canola | plastid | 52.78 | 6.77 |
| AT3G06540.1 | Thale cress | cytosol | 52.78 | 6.75 |
| CDY24684 | Canola | cytosol | 52.78 | 6.71 |
| Solyc02g082730.2.1 | Tomato | extracellular | 51.39 | 6.7 |
| PGSC0003DMT400003853 | Potato | peroxisome | 51.39 | 6.69 |
| KRH76543 | Soybean | cytosol, peroxisome, plasma membrane | 51.39 | 6.69 |
| KRH28917 | Soybean | cytosol, peroxisome, plastid | 50.0 | 6.53 |
| Bra029586.1-P | Field mustard | peroxisome | 51.39 | 6.53 |
| CDY34947 | Canola | cytosol, plastid, vacuole | 48.61 | 6.39 |
| VIT_04s0044g00070.t01 | Wine grape | peroxisome | 48.61 | 6.29 |
| Zm00001d009786_P001 | Maize | plastid | 27.78 | 5.83 |
| Zm00001d010255_P001 | Maize | cytosol, extracellular | 34.72 | 5.51 |
| Zm00001d011867_P001 | Maize | cytosol | 27.78 | 5.46 |
| Zm00001d029596_P001 | Maize | cytosol, extracellular | 33.33 | 5.37 |
| Zm00001d010251_P003 | Maize | cytosol | 31.94 | 4.91 |
| Zm00001d005498_P001 | Maize | cytosol | 33.33 | 4.86 |
| Zm00001d038200_P002 | Maize | plastid | 33.33 | 4.72 |
| KRH05675 | Soybean | extracellular, vacuole | 2.78 | 1.01 |
| Zm00001d007315_P001 | Maize | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.50.50.60 | MapMan:35.1 | UniProt:A0A1D6Q4C1 | ProteinID:AQK53402.1 | InterPro:FAD/NAD-bd_sf | InterPro:GDP_dissociation_inhibitor |
| GO:GO:0003674 | GO:GO:0005092 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0007264 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0030234 | GO:GO:0050790 |
| InterPro:IPR036188 | PFAM:PF00996 | PANTHER:PTHR11787 | PANTHER:PTHR11787:SF23 | UniParc:UPI0008433469 | EnsemblPlantsGene:Zm00001d050984 |
| EnsemblPlants:Zm00001d050984_P001 | EnsemblPlants:Zm00001d050984_T001 | : | : | : | : |
Description
Rab escort protein 1
Coordinates
chr4:-:135263242..135264494
Molecular Weight (calculated)
7874.1 Da
IEP (calculated)
4.214
GRAVY (calculated)
-0.312
Length
72 amino acids
Sequence
(BLAST)
(BLAST)
1: MADYNQDGAD PCEKLITTRE GIETIDLYSS SNGRFANAEG AFIYPMYGHG ELPQAFCRCA AVKDAISIST NY
001: MIDIPPYPPL DPSNYDLIVV GTGVSESVLA AAASSSGSSV LHLDPNPFYG SHFASLSLPD LTSFLHSNSV SPPPSPSSPP LPPSNNHDFI SVDLVNRSLY
101: SSVEISSFES EILEEHSRRF NVDLAGPRVV FCADESINLM LKSGANNYVE FKSIDASFVG DSSGELRNVP DSRAAIFKDK SLTLLEKNQL MKFFKLVQSH
201: LASSTEKDDS TTVKISEEDM ESPFVDFLSK MRLPPKIKSI ILYAIAMLDY DQDNTETCRH LLKTKEGIDR LALYITSMGR FSNALGALIY PIYGQGELPQ
301: AFCRRAAVKG CIYVLRMPIT ALLLDKETGG YKGVRLASGQ EIFSQKLILD PCVTVGLESL SSLTDQQNET LSVLVPKSMI NKEKIARGVC VIRGSVKANV
401: SNALVVYPPK SLFPEQLTAI RVLQLGSGLA VCPADMHVLY LSTLCDNDDQ GIKALLSAMS NLISLPVPEN RQSDSVVEND TSETKPILLW RALYVQELVK
501: GEFGGTISSM PSPDGNLNYN EIVESAVKLY EKLMGSEELF KEETSPAENT TEEENDGGVE IED
101: SSVEISSFES EILEEHSRRF NVDLAGPRVV FCADESINLM LKSGANNYVE FKSIDASFVG DSSGELRNVP DSRAAIFKDK SLTLLEKNQL MKFFKLVQSH
201: LASSTEKDDS TTVKISEEDM ESPFVDFLSK MRLPPKIKSI ILYAIAMLDY DQDNTETCRH LLKTKEGIDR LALYITSMGR FSNALGALIY PIYGQGELPQ
301: AFCRRAAVKG CIYVLRMPIT ALLLDKETGG YKGVRLASGQ EIFSQKLILD PCVTVGLESL SSLTDQQNET LSVLVPKSMI NKEKIARGVC VIRGSVKANV
401: SNALVVYPPK SLFPEQLTAI RVLQLGSGLA VCPADMHVLY LSTLCDNDDQ GIKALLSAMS NLISLPVPEN RQSDSVVEND TSETKPILLW RALYVQELVK
501: GEFGGTISSM PSPDGNLNYN EIVESAVKLY EKLMGSEELF KEETSPAENT TEEENDGGVE IED
Arabidopsis Description
REPRab escort protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LLD4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.