Factsheet for PGSC0003DMT400003853

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 2
peroxisome 2
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400021794
PGSC0003DMT400034567

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06540.1	PGSC0003DMT400021794	AT5G47520.1	21798944
AT3G06540.1	PGSC0003DMT400034567	AT5G47520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g082730.2.1	Tomato	extracellular	87.52	87.68
VIT_04s0044g00070.t01	Wine grape	peroxisome	56.06	55.76
KRH76543	Soybean	cytosol, peroxisome, plasma membrane	52.98	52.98
KRH28917	Soybean	cytosol, peroxisome, plastid	52.62	52.81
Zm00001d004622_P001	Maize	cytosol	6.87	52.78
Zm00001d050984_P001	Maize	cytosol, mitochondrion, peroxisome	6.69	51.39
AT3G06540.1	Thale cress	cytosol	50.99	50.09
CDY05274	Canola	plastid	48.64	47.95
CDY34947	Canola	cytosol, plastid, vacuole	47.38	47.81
CDY24684	Canola	cytosol	48.64	47.53
Bra029586.1-P	Field mustard	peroxisome	47.92	46.74
Os01t0269100-01	Rice	plasma membrane	26.76	45.82
KRH05675	Soybean	extracellular, vacuole	16.09	44.72
GSMUA_Achr6P03390_001	Banana	peroxisome	38.7	43.5
HORVU3Hr1G038200.3	Barley	cytosol, nucleus, peroxisome	44.12	43.49
KXG32246	Sorghum	cytosol, nucleus, peroxisome	42.86	42.4
TraesCS3A01G185700.1	Wheat	cytosol	42.86	42.32
TraesCS3B01G215300.1	Wheat	cytosol, nucleus, peroxisome	42.86	42.32
Zm00001d040408_P003	Maize	peroxisome	42.31	42.16
TraesCS3D01G189700.1	Wheat	cytosol, nucleus, peroxisome	42.5	41.96
Zm00001d008269_P001	Maize	peroxisome	41.95	41.65
Zm00001d009201_P001	Maize	cytosol	11.21	36.69
PGSC0003DMT400035649	Potato	cytosol	20.25	25.23

Protein Annotations

Gene3D:1.10.405.10	EntrezGene:102593627	MapMan:22.8.4.1.3	Gene3D:3.30.519.10	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf
InterPro:GDP_dissociation_inhibitor	GO:GO:0003674	GO:GO:0005092	GO:GO:0005096	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005968
GO:GO:0006464	GO:GO:0006810	GO:GO:0006886	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0017137	GO:GO:0018344
GO:GO:0019538	GO:GO:0030234	GO:GO:0043547	GO:GO:0050790	GO:GO:2000541	InterPro:IPR036188
UniProt:M0ZMF0	PFAM:PF00996	EnsemblPlantsGene:PGSC0003DMG401001521	PGSC:PGSC0003DMG401001521	EnsemblPlants:PGSC0003DMT400003853	PIRSF:PIRSF016550
PRINTS:PR00891	PANTHER:PTHR11787	PANTHER:PTHR11787:SF23	InterPro:Rab_escort	SUPFAM:SSF51905	SUPFAM:SSF54373
UniParc:UPI0002959B2D	RefSeq:XP_006340834.1	SEG:seg	:	:	:

Description

Rab escort protein [Source:PGSC_GENE;Acc:PGSC0003DMG401001521]

Coordinates

chr2:+:38536735..38544336

Molecular Weight (calculated)

60301.4 Da

IEP (calculated)

4.727

GRAVY (calculated)

-0.134

Length

553 amino acids

Sequence
(BLAST)

001: MDETTSYPPI EPSNFDLIVV GTGLPEAILA AAASAAGKSV LHLDPNPSYG SHYASLPLQE FTTYIESHSS QSSANFPIPQ SDMDSGFTRV PLTTRPLYSS
101: VEITSYSPEP LEQSRKFNVD LSGPRVLLCA DAMIDLILKS EVNQYMEFKS IDGSFISDGE GNLESVPDSR SAIFKDRKLS FTEKNQLMRF FKLVQGHLEA
201: AAAADGGESS ESKSISEQDL ESPFVEFLSK MGLSAKLKSI VLYAIAMAEY DQENGDVCKS VLKTKDGIDR LALYHSSVGR FPNAPGAMIY PIYGQGELPQ
301: AFCRRAAVKG CIYVLRMPVN SLLMDKASGS YKGVCLASEQ ELFSHKLILA PSFVVQLPLP HSSPDAHDFG SRNATEKLAR SICISKHSLK LDVANCLAFF
401: PPRSLFPEQV TAIHVLQLSS NVAVCPSGMF LTYLSAICED DVQGKKLLHA AINVLFHVPV SGSSGNNNNF AEDQSETGDA KPALLWSVLY TQELAKFQGV
501: LDNIIRTPMP DGSPYYHDLL GATEKIFQEL YSGEEFFPKS TSSEEGAAQE LED

Best Arabidopsis Sequence Match ( AT3G06540.1 )
(BLAST)

001: MIDIPPYPPL DPSNYDLIVV GTGVSESVLA AAASSSGSSV LHLDPNPFYG SHFASLSLPD LTSFLHSNSV SPPPSPSSPP LPPSNNHDFI SVDLVNRSLY
101: SSVEISSFES EILEEHSRRF NVDLAGPRVV FCADESINLM LKSGANNYVE FKSIDASFVG DSSGELRNVP DSRAAIFKDK SLTLLEKNQL MKFFKLVQSH
201: LASSTEKDDS TTVKISEEDM ESPFVDFLSK MRLPPKIKSI ILYAIAMLDY DQDNTETCRH LLKTKEGIDR LALYITSMGR FSNALGALIY PIYGQGELPQ
301: AFCRRAAVKG CIYVLRMPIT ALLLDKETGG YKGVRLASGQ EIFSQKLILD PCVTVGLESL SSLTDQQNET LSVLVPKSMI NKEKIARGVC VIRGSVKANV
401: SNALVVYPPK SLFPEQLTAI RVLQLGSGLA VCPADMHVLY LSTLCDNDDQ GIKALLSAMS NLISLPVPEN RQSDSVVEND TSETKPILLW RALYVQELVK
501: GEFGGTISSM PSPDGNLNYN EIVESAVKLY EKLMGSEELF KEETSPAENT TEEENDGGVE IED

Arabidopsis Description

REPRab escort protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LLD4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.