Factsheet for PGSC0003DMT400021794

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g054150.2.1	Tomato	cytosol	97.79	97.79
PGSC0003DMT400034567	Potato	cytosol	89.82	90.22
KRH34233	Soybean	cytosol	83.19	84.3
AT5G47520.1	Thale cress	cytosol	81.42	83.26
KRG92561	Soybean	cytosol	82.74	82.74
CDY25963	Canola	cytosol	79.65	82.19
CDY41053	Canola	cytosol	80.53	81.98
Bra017482.1-P	Field mustard	cytosol	80.53	81.98
CDY17729	Canola	cytosol	80.09	81.9
Bra024937.1-P	Field mustard	cytosol	79.65	81.08
CDY40561	Canola	cytosol	79.2	81.0
CDX77774	Canola	cytosol	79.2	81.0
Bra022136.1-P	Field mustard	cytosol	79.2	81.0
CDY28925	Canola	cytosol	78.76	80.54
GSMUA_Achr6P00700_001	Banana	cytosol	76.11	78.18
Os07t0634200-01	Rice	plasma membrane	75.66	77.73
GSMUA_Achr2P15860_001	Banana	cytosol	76.55	77.23
EER97606	Sorghum	cytosol	75.22	76.58
Zm00001d022251_P002	Maize	cytosol	74.78	76.13
HORVU2Hr1G027660.2	Barley	cytosol	74.34	75.34
TraesCS2A01G153500.1	Wheat	cytosol	74.34	75.34
TraesCS2D01G158800.1	Wheat	cytosol	74.34	75.34
GSMUA_Achr5P06170_001	Banana	cytosol	53.54	71.6
TraesCS2B01G178600.1	Wheat	cytosol	73.01	70.21
PGSC0003DMT400013853	Potato	cytosol	60.62	65.24
PGSC0003DMT400031071	Potato	cytosol	61.06	63.59
PGSC0003DMT400042789	Potato	cytosol	60.18	62.96
PGSC0003DMT400014741	Potato	cytosol	48.23	48.88

Protein Annotations

EntrezGene:102591215	MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M1AFQ1	InterPro:P-loop_NTPase
PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400008457	PGSC:PGSC0003DMG400008457	EnsemblPlants:PGSC0003DMT400021794	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF430	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002963973	RefSeq:XP_006365850.1
RefSeq:XP_015160109.1	RefSeq:XP_015160110.1	:	:	:	:

Description

Guanine nucleotide regulatory protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008457]

Coordinates

chr5:+:49792603..49798726

Molecular Weight (calculated)

25009.5 Da

IEP (calculated)

7.411

GRAVY (calculated)

-0.374

Length

226 amino acids

Sequence
(BLAST)

001: MAHNSEEEKK EDYLFKIVLI GDSAVGKSNL LARFARDEFY PNSKSTIGVE FQTQKINING KEVKAQIWDT AGQERFRAVT SAYYRGAVGA LLVYDISRRL
101: TFDNIGRWLN ELQTHSDMNV VIILVGNKSD LKDAREVTTA EGKALAEAKG LFFIETSALD SSNVTSAFQT VVREIYNILS RKVIQSQELQ KKDSGRLANG
201: KSVVLQADDG NQETVAETKK GGCCSS

Best Arabidopsis Sequence Match ( AT5G47520.1 )
(BLAST)

001: MAFYSEDDKS EDYLFKIVLI GDSAVGKSNL LARFARDEFY PNSKSTIGVE FQTQKMDING KEIKAQIWDT AGQERFRAVT SAYYRGAVGA LLVYDISRRQ
101: TFHSIGRWLN ELHTHSDMNV VTILVGNKSD LKDLREVSTA EGKALAEAQG LFFMETSALD SSNVAAAFET VVKEIYNILS RKVMSSQELN KQDPASLSNG
201: KKVVIPSDGQ GEFKKGGCCS S

Arabidopsis Description

RABA5ARas-related protein RABA5a [Source:UniProtKB/Swiss-Prot;Acc:Q9FGK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.