CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92561	Soybean	cytosol	98.21	96.9
AT5G47520.1	Thale cress	cytosol	88.34	89.14
CDX77774	Canola	cytosol	86.55	87.33
CDY17729	Canola	cytosol	86.55	87.33
CDY25963	Canola	cytosol	85.65	87.21
Bra017482.1-P	Field mustard	cytosol	86.55	86.94
Bra024937.1-P	Field mustard	cytosol	86.55	86.94
CDY41053	Canola	cytosol	86.55	86.94
Bra022136.1-P	Field mustard	cytosol	86.1	86.88
CDY40561	Canola	cytosol	86.1	86.88
CDY28925	Canola	cytosol	85.65	86.43
PGSC0003DMT400034567	Potato	cytosol	86.55	85.78
PGSC0003DMT400021794	Potato	cytosol	84.3	83.19
Solyc05g054150.2.1	Tomato	cytosol	83.86	82.74
EER97606	Sorghum	cytosol	78.92	79.28
Zm00001d022251_P002	Maize	cytosol	78.48	78.83
GSMUA_Achr6P00700_001	Banana	cytosol	77.58	78.64
Os07t0634200-01	Rice	plasma membrane	77.58	78.64
GSMUA_Achr2P15860_001	Banana	cytosol	78.92	78.57
TraesCS2D01G158800.1	Wheat	cytosol	77.58	77.58
TraesCS2A01G153500.1	Wheat	cytosol	76.68	76.68
HORVU2Hr1G027660.2	Barley	cytosol	76.68	76.68
GSMUA_Achr5P06170_001	Banana	cytosol	57.85	76.33
TraesCS2B01G178600.1	Wheat	cytosol	75.34	71.49
Solyc11g012460.1.1	Tomato	plastid	85.65	69.2
KRH46603	Soybean	cytosol	63.23	66.2
KRH46865	Soybean	endoplasmic reticulum	63.23	64.38
KRH01822	Soybean	cytosol	62.78	63.93
KRH48616	Soybean	cytosol	19.73	59.46
KRG93819	Soybean	cytosol	21.97	51.58
KRH39102	Soybean	cytosol	40.81	50.56
KRH41826	Soybean	cytosol	48.88	50.0
KRH60507	Soybean	cytosol	47.53	48.85
KRH55234	Soybean	cytosol	17.04	48.72
KRH48618	Soybean	cytosol	27.8	43.36

Protein Annotations

EntrezGene:100805185	MapMan:22.8.1.1	Gene3D:3.40.50.300	EMBL:ACUP02006586	EnsemblPlantsGene:GLYMA_10G171600	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:I1LBW5	ProteinID:KRH34232.1	EnsemblPlants:KRH34233	ProteinID:KRH34233	ProteinID:KRH34233.1	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF430	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI000233CF47	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:40519258..40523745

Molecular Weight (calculated)

24760.3 Da

IEP (calculated)

5.009

GRAVY (calculated)

-0.306

Length

223 amino acids

Sequence
(BLAST)

001: MAFYNEEEKT EDYLFKIVLI GDSAVGKSNL LARFARDEFY PNSKSTIGVE FQTQKMDING KEVKAQIWDT AGQERFRAVT SAYYRGAVGA LLVYDISRRQ
101: TFDSIGRWLN ELHTHSDMNV VTILVGNKSD LKDAREVATA EGKALAEAQG LFFMETSALD SSNVAAAFET VVKEIYNILS RKVMISQELN KQDVTRIENG
201: KTVVLQGEGD VEAAQSKKGC CSS

Best Arabidopsis Sequence Match ( AT5G47520.1 )
(BLAST)

001: MAFYSEDDKS EDYLFKIVLI GDSAVGKSNL LARFARDEFY PNSKSTIGVE FQTQKMDING KEIKAQIWDT AGQERFRAVT SAYYRGAVGA LLVYDISRRQ
101: TFHSIGRWLN ELHTHSDMNV VTILVGNKSD LKDLREVSTA EGKALAEAQG LFFMETSALD SSNVAAAFET VVKEIYNILS RKVMSSQELN KQDPASLSNG
201: KKVVIPSDGQ GEFKKGGCCS S

Arabidopsis Description

RABA5ARas-related protein RABA5a [Source:UniProtKB/Swiss-Prot;Acc:Q9FGK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.