Factsheet for Solyc11g012460.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034567	Potato	cytosol	78.62	96.44
Solyc05g054150.2.1	Tomato	cytosol	71.74	87.61
KRH34233	Soybean	cytosol	69.2	85.65
KRG92561	Soybean	cytosol	69.2	84.51
CDY25963	Canola	cytosol	66.3	83.56
CDY17729	Canola	cytosol	66.67	83.26
AT5G47520.1	Thale cress	cytosol	66.67	83.26
CDY41053	Canola	cytosol	66.67	82.88
Bra024937.1-P	Field mustard	cytosol	66.67	82.88
Bra017482.1-P	Field mustard	cytosol	66.67	82.88
CDX77774	Canola	cytosol	65.94	82.35
CDY40561	Canola	cytosol	64.86	81.0
Bra022136.1-P	Field mustard	cytosol	64.86	81.0
CDY28925	Canola	cytosol	64.49	80.54
GSMUA_Achr6P00700_001	Banana	cytosol	63.04	79.09
GSMUA_Achr2P15860_001	Banana	cytosol	63.04	77.68
EER97606	Sorghum	cytosol	62.32	77.48
Os07t0634200-01	Rice	plasma membrane	61.59	77.27
Zm00001d022251_P002	Maize	cytosol	61.96	77.03
HORVU2Hr1G027660.2	Barley	cytosol	61.59	76.23
TraesCS2A01G153500.1	Wheat	cytosol	61.59	76.23
TraesCS2D01G158800.1	Wheat	cytosol	61.59	76.23
GSMUA_Achr5P06170_001	Banana	cytosol	44.57	72.78
TraesCS2B01G178600.1	Wheat	cytosol	61.59	72.34
Solyc09g056340.2.1	Tomato	cytosol	48.19	63.33
Solyc09g097900.2.1	Tomato	cytosol	49.28	62.96
Solyc09g098170.2.1	Tomato	plastid	48.91	62.21
Solyc10g050030.1.1	Tomato	cytosol	15.94	55.7
Solyc03g118820.2.1	Tomato	plastid	38.77	44.21

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:K4D650	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF430	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	EnsemblPlantsGene:Solyc11g012460.1
EnsemblPlants:Solyc11g012460.1.1	TIGRFAMs:TIGR00231	UniParc:UPI0002769F75	:	:	:

Description

No Description!

Coordinates

chr11:+:5297608..5298810

Molecular Weight (calculated)

30855.3 Da

IEP (calculated)

5.084

GRAVY (calculated)

-0.383

Length

276 amino acids

Sequence
(BLAST)

001: MAFRSEETQT EDYLFKIVLI GDSAVGKSNL LARFARDEFY PNSKSTIGVE FQTQKLDING KEVKAQIWDT AGQERFRAVT SAYYRGAVGA LLVYDISRRL
101: TFENIGRWLN ELQTHSDMNV VTILVGNKSD LKDAREVTTA EGKSLAEAQG LFFIETSALD SSNVTAAFQT VVKEIYNILS RKVMQSQELQ KKDSGRLANG
201: KTVVLQADEN QEAETQAKKD SSLFSVFSNL CLFSNIMCQN QALRVRSHED PDSHELVASC ETTRGVEEGR GNFSYL

Best Arabidopsis Sequence Match ( AT5G47520.1 )
(BLAST)

001: MAFYSEDDKS EDYLFKIVLI GDSAVGKSNL LARFARDEFY PNSKSTIGVE FQTQKMDING KEIKAQIWDT AGQERFRAVT SAYYRGAVGA LLVYDISRRQ
101: TFHSIGRWLN ELHTHSDMNV VTILVGNKSD LKDLREVSTA EGKALAEAQG LFFMETSALD SSNVAAAFET VVKEIYNILS RKVMSSQELN KQDPASLSNG
201: KKVVIPSDGQ GEFKKGGCCS S

Arabidopsis Description

RABA5ARas-related protein RABA5a [Source:UniProtKB/Swiss-Prot;Acc:Q9FGK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.