CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34233	Soybean	cytosol	96.9	98.21
AT5G47520.1	Thale cress	cytosol	86.73	88.69
CDX77774	Canola	cytosol	84.96	86.88
CDY17729	Canola	cytosol	84.96	86.88
CDY25963	Canola	cytosol	84.07	86.76
Bra017482.1-P	Field mustard	cytosol	84.96	86.49
CDY41053	Canola	cytosol	84.96	86.49
Bra024937.1-P	Field mustard	cytosol	84.96	86.49
CDY40561	Canola	cytosol	84.51	86.43
Bra022136.1-P	Field mustard	cytosol	84.51	86.43
CDY28925	Canola	cytosol	84.07	85.97
PGSC0003DMT400034567	Potato	cytosol	85.4	85.78
Solyc05g054150.2.1	Tomato	cytosol	82.74	82.74
PGSC0003DMT400021794	Potato	cytosol	82.74	82.74
EER97606	Sorghum	cytosol	77.88	79.28
GSMUA_Achr2P15860_001	Banana	cytosol	78.32	79.02
Zm00001d022251_P002	Maize	cytosol	77.43	78.83
GSMUA_Achr6P00700_001	Banana	cytosol	76.55	78.64
Os07t0634200-01	Rice	plasma membrane	76.55	78.64
TraesCS2D01G158800.1	Wheat	cytosol	76.55	77.58
TraesCS2A01G153500.1	Wheat	cytosol	75.66	76.68
HORVU2Hr1G027660.2	Barley	cytosol	75.66	76.68
GSMUA_Achr5P06170_001	Banana	cytosol	57.08	76.33
TraesCS2B01G178600.1	Wheat	cytosol	73.89	71.06
Solyc11g012460.1.1	Tomato	plastid	84.51	69.2
KRH46603	Soybean	cytosol	62.83	66.67
KRH46865	Soybean	endoplasmic reticulum	62.39	64.38
KRH01822	Soybean	cytosol	61.95	63.93
KRH48616	Soybean	cytosol	19.47	59.46
KRG93819	Soybean	cytosol	21.68	51.58
KRH39102	Soybean	cytosol	40.27	50.56
KRH41826	Soybean	cytosol	48.23	50.0
KRH60507	Soybean	cytosol	46.9	48.85
KRH55234	Soybean	cytosol	16.81	48.72
KRH48618	Soybean	cytosol	27.43	43.36

Protein Annotations

EntrezGene:100789187	MapMan:22.8.1.1	Gene3D:3.40.50.300	EMBL:ACUP02012761	EnsemblPlantsGene:GLYMA_20G218700	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:I1NII7	EnsemblPlants:KRG92561	ProteinID:KRG92561	ProteinID:KRG92561.1	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF430	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI000233DCB0	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:45443751..45449146

Molecular Weight (calculated)

25136.6 Da

IEP (calculated)

4.901

GRAVY (calculated)

-0.385

Length

226 amino acids

Sequence
(BLAST)

001: MAFYNEEEKT EDYLFKIVLI GDSAVGKSNL LARFARDEFY PNSKSTIGVE FQTQKMDING KEVKAQIWDT AGQERFRAVT SAYYRGAVGA LLVYDISRRQ
101: TFDSIGRWLN ELHTHSDMNV VTILVGNKSD LKDAREVATA EGKALAEAQG LFFMETSALD SSNVAAAFET VVKEIYNILS RKVMMSQELN KQDVTRIENG
201: KTVVLQGEGE GDGEADAQSK KRCCSS

Best Arabidopsis Sequence Match ( AT5G47520.1 )
(BLAST)

001: MAFYSEDDKS EDYLFKIVLI GDSAVGKSNL LARFARDEFY PNSKSTIGVE FQTQKMDING KEIKAQIWDT AGQERFRAVT SAYYRGAVGA LLVYDISRRQ
101: TFHSIGRWLN ELHTHSDMNV VTILVGNKSD LKDLREVSTA EGKALAEAQG LFFMETSALD SSNVAAAFET VVKEIYNILS RKVMSSQELN KQDPASLSNG
201: KKVVIPSDGQ GEFKKGGCCS S

Arabidopsis Description

RABA5ARas-related protein RABA5a [Source:UniProtKB/Swiss-Prot;Acc:Q9FGK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.