CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77774	Canola	cytosol	99.09	99.09
Bra024937.1-P	Field mustard	cytosol	98.64	98.2
CDY41053	Canola	cytosol	96.83	96.4
CDY25963	Canola	cytosol	95.48	96.35
AT5G47520.1	Thale cress	cytosol	95.93	95.93
CDY40561	Canola	cytosol	93.21	93.21
CDY28925	Canola	cytosol	93.21	93.21
KRH34233	Soybean	cytosol	87.33	86.55
KRG92561	Soybean	cytosol	86.88	84.96
PGSC0003DMT400034567	Potato	cytosol	83.71	82.22
PGSC0003DMT400021794	Potato	cytosol	81.9	80.09
Solyc05g054150.2.1	Tomato	cytosol	81.45	79.65
Os07t0634200-01	Rice	plasma membrane	78.28	78.64
EER97606	Sorghum	cytosol	78.73	78.38
GSMUA_Achr2P15860_001	Banana	cytosol	79.19	78.12
Zm00001d022251_P002	Maize	cytosol	78.28	77.93
HORVU2Hr1G027660.2	Barley	cytosol	77.38	76.68
GSMUA_Achr6P00700_001	Banana	cytosol	76.02	76.36
TraesCS2D01G158800.1	Wheat	cytosol	76.92	76.23
TraesCS2A01G153500.1	Wheat	cytosol	76.92	76.23
GSMUA_Achr5P06170_001	Banana	cytosol	56.56	73.96
TraesCS2B01G178600.1	Wheat	cytosol	76.02	71.49
Solyc11g012460.1.1	Tomato	plastid	83.26	66.67
CDX83500	Canola	cytosol	61.09	63.38
CDY70114	Canola	cytosol	60.63	62.91
CDY42801	Canola	cytosol	60.63	62.91
CDY17945	Canola	cytosol	60.63	62.91
CDY55745	Canola	cytosol	61.99	62.56
CDX84764	Canola	cytosol	61.09	61.64
CDX79430	Canola	cytosol	61.09	61.64
CDY06181	Canola	cytosol	62.9	57.2
CDY54837	Canola	cytosol	16.29	56.25
CDY39445	Canola	cytosol	53.39	54.63
CDX77609	Canola	cytosol, plasma membrane	53.39	54.63
CDY10008	Canola	mitochondrion	63.35	53.44
CDX96730	Canola	cytosol	52.04	50.88
CDX83007	Canola	cytosol	25.34	50.0
CDX83861	Canola	cytosol	51.13	50.0
CDX72997	Canola	cytosol	49.32	47.39
CDY51631	Canola	cytosol	21.27	46.53
CDX96853	Canola	mitochondrion	29.86	44.0
CDY65720	Canola	extracellular	25.34	43.08

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:A0A078FX50	UniProt:A0A078FX50	EnsemblPlants:CDY17729	ProteinID:CDY17729
ProteinID:CDY17729.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00001954001	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF430	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0004EED8A0

Description

BnaA06g35480DBnaA06g35480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FX50]

Coordinates

chrLK032076:+:742900..744970

Molecular Weight (calculated)

24434.8 Da

IEP (calculated)

5.395

GRAVY (calculated)

-0.369

Length

221 amino acids

Sequence
(BLAST)

001: MAFHSEDDKS EDYLFKIVLI GDSAVGKSNL LARFARDEFY PNSKSTIGVE FQTQKMDING KEIKAQIWDT AGQERFRAVT SAYYRGAVGA LLVYDISRQQ
101: TFQSIGRWLN ELHTHSDMNV VTILVGNKSD LKDIREVPTS EGKALAEAQG LFFMETSALD SSNVAAAFET VVKEIYNILS RKVMSSQELN KQDPASLSNG
201: KKVVIPSDEQ GESKKGGCCS T

Best Arabidopsis Sequence Match ( AT5G47520.1 )
(BLAST)

001: MAFYSEDDKS EDYLFKIVLI GDSAVGKSNL LARFARDEFY PNSKSTIGVE FQTQKMDING KEIKAQIWDT AGQERFRAVT SAYYRGAVGA LLVYDISRRQ
101: TFHSIGRWLN ELHTHSDMNV VTILVGNKSD LKDLREVSTA EGKALAEAQG LFFMETSALD SSNVAAAFET VVKEIYNILS RKVMSSQELN KQDPASLSNG
201: KKVVIPSDGQ GEFKKGGCCS S

Arabidopsis Description

RABA5ARas-related protein RABA5a [Source:UniProtKB/Swiss-Prot;Acc:Q9FGK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.