CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70114	Canola	cytosol	98.59	98.59
AT2G43130.1	Thale cress	cytosol	95.77	95.33
CDY42801	Canola	cytosol	93.43	93.43
CDX83500	Canola	cytosol	93.43	93.43
CDY55745	Canola	cytosol	83.1	80.82
CDX79430	Canola	cytosol	81.22	79.0
CDX84764	Canola	cytosol	81.22	79.0
Zm00001d031562_P001	Maize	cytosol	45.54	78.23
Solyc09g097900.2.1	Tomato	cytosol	78.4	77.31
PGSC0003DMT400042789	Potato	cytosol	77.93	76.85
TraesCS7A01G256000.1	Wheat	cytosol	77.46	76.04
TraesCS7B01G152600.1	Wheat	cytosol	77.0	75.58
TraesCS7D01G254400.1	Wheat	cytosol	76.53	75.12
GSMUA_Achr11P...	Banana	cytosol	75.59	74.54
OQU80857	Sorghum	cytosol	75.59	74.54
Os08t0525000-01	Rice	plasma membrane	75.59	74.54
HORVU7Hr1G052840.3	Barley	cytosol	76.53	74.43
GSMUA_Achr11P...	Banana	cytosol	72.77	71.43
CDY06181	Canola	cytosol	81.22	71.19
CDY10008	Canola	mitochondrion	80.75	65.65
KRH55234	Soybean	cytosol	23.94	65.38
CDY65720	Canola	extracellular	38.03	62.31
CDY17729	Canola	cytosol	62.91	60.63
CDX77774	Canola	cytosol	62.91	60.63
CDY40561	Canola	cytosol	62.44	60.18
CDY25963	Canola	cytosol	61.5	59.82
CDY28925	Canola	cytosol	61.97	59.73
CDY41053	Canola	cytosol	61.97	59.46
CDY54837	Canola	cytosol	15.96	53.12
CDY39445	Canola	cytosol	53.05	52.31
CDX77609	Canola	cytosol, plasma membrane	53.05	52.31
CDX96730	Canola	cytosol	50.7	47.79
CDY51631	Canola	cytosol	22.54	47.52
CDX83861	Canola	cytosol	50.23	47.35
CDX72997	Canola	cytosol	50.23	46.52
CDX83007	Canola	cytosol	23.0	43.75
CDX96853	Canola	mitochondrion	27.7	39.33

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:A0A078FTU8	UniProt:A0A078FTU8	EnsemblPlants:CDY17945	ProteinID:CDY17945
ProteinID:CDY17945.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00002304001	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF884	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0004EC3290

Description

BnaC04g02740DBnaC04g02740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FTU8]

Coordinates

chrLK032079:+:725452..726719

Molecular Weight (calculated)

23844.9 Da

IEP (calculated)

4.751

GRAVY (calculated)

-0.388

Length

213 amino acids

Sequence
(BLAST)

001: MSDDERCEEY LFKIVIIGDS AVGKSNLLTR YARNEFNPNS KATIGVEFQT QSMLIDNKEV KAQIWDTAGQ ERFRAVTSAY YRGAVGALVV YDITRTSTFE
101: NVGRWLDELN THSDTTVAKM LIGNKCDLES IRAVSVEEGK SLAESQGLFF METSALDSTN VSTAFEMVIR DIYSNISRKQ LNSDSYKEEV TGNRVSLVKN
201: ESEGTKTFSC CSR

Best Arabidopsis Sequence Match ( AT2G43130.1 )
(BLAST)

001: MSDDDERGEE YLFKIVIIGD SAVGKSNLLT RYARNEFNPN SKATIGVEFQ TQSMLIDGKE VKAQIWDTAG QERFRAVTSA YYRGAVGALV VYDITRSSTF
101: ENVGRWLDEL NTHSDTTVAK MLIGNKCDLE SIRAVSVEEG KSLAESEGLF FMETSALDST NVKTAFEMVI REIYSNISRK QLNSDSYKEE LTVNRVSLVK
201: NENEGTKTFS CCSR

Arabidopsis Description

RABA5CRas-related protein RABA5c [Source:UniProtKB/Swiss-Prot;Acc:P28187]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.