Factsheet for PGSC0003DMT400042789

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g097900.2.1	Tomato	cytosol	99.54	99.54
PGSC0003DMT400031071	Potato	cytosol	85.19	84.79
Os08t0525000-01	Rice	plasma membrane	80.09	80.09
AT2G43130.1	Thale cress	cytosol	78.7	79.44
AT2G31680.1	Thale cress	cytosol	80.09	79.0
TraesCS7B01G152600.1	Wheat	cytosol	79.17	78.8
OQU80857	Sorghum	cytosol	78.7	78.7
Bra000290.1-P	Field mustard	cytosol	77.31	78.4
CDX83500	Canola	cytosol	77.31	78.4
CDY42801	Canola	cytosol	77.31	78.4
TraesCS7A01G256000.1	Wheat	cytosol	78.7	78.34
CDX79430	Canola	cytosol	79.17	78.08
HORVU7Hr1G052840.3	Barley	cytosol	79.17	78.08
CDY70114	Canola	cytosol	76.85	77.93
Bra004747.1-P	Field mustard	cytosol	76.85	77.93
CDY17945	Canola	cytosol	76.85	77.93
Zm00001d031562_P001	Maize	cytosol	44.44	77.42
TraesCS7D01G254400.1	Wheat	cytosol	77.78	77.42
GSMUA_Achr11P...	Banana	cytosol	77.78	77.42
CDX84764	Canola	cytosol	78.24	77.17
Bra022861.1-P	Field mustard	cytosol	77.78	77.06
PGSC0003DMT400013853	Potato	cytosol	74.54	76.67
Bra005650.1-P	Field mustard	cytosol	77.31	76.26
CDY55745	Canola	cytosol	77.31	76.26
GSMUA_Achr11P...	Banana	cytosol	75.93	75.93
Bra032453.1-P	Field mustard	cytosol	75.93	75.23
CDY06181	Canola	cytosol	76.39	67.9
KRH55234	Soybean	cytosol	23.61	65.38
AT1G05810.2	Thale cress	plastid	77.78	63.64
CDY10008	Canola	mitochondrion	76.39	62.98
PGSC0003DMT400034567	Potato	cytosol	63.43	60.89
PGSC0003DMT400021794	Potato	cytosol	62.96	60.18
PGSC0003DMT400014741	Potato	cytosol	50.93	49.33

Protein Annotations

EntrezGene:102600528	MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M1BDM9	InterPro:P-loop_NTPase
PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400016607	PGSC:PGSC0003DMG400016607	EnsemblPlants:PGSC0003DMT400042789	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF884	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002965D15	RefSeq:XP_006358795.1
SEG:seg	:	:	:	:	:

Description

Nt-Rab11e protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016607]

Coordinates

chr9:-:60415785..60422429

Molecular Weight (calculated)

24283.4 Da

IEP (calculated)

4.698

GRAVY (calculated)

-0.350

Length

216 amino acids

Sequence
(BLAST)

001: MDSSDDDVEE YLFKIVIIGD SAVGKSNLLS RYARDEFNLH SKATIGVEFQ TQVLEINGKE VKAQIWDTAG QERFRAVTSA YYRGAFGALL VYDISRRSTF
101: ESVTRWLDEL NTHCDTTVAK MLVGNKCDLD NIRDVSIEEG AKLAEAEGLF FMETSALDST NVNKAFEIVI REIYSNVSRK VLNSDSYKAE LSINRVNLVK
201: DDGEGSKRSW SNCCSR

Best Arabidopsis Sequence Match ( AT3G07410.1 )
(BLAST)

001: MGKEDDRGEE YLFKIVLIGD SAVGKSNLLS RFSRDEFDTN SKATIGVEFQ TQLVEIEGKE VKAQIWDTAG QERFRAVTSA YYRGAFGALI VYDITRGDTF
101: ESVKRWLQEL NTHCDTAVAQ MLVGNKCDLE DIRAVSVEEG KALAEEEGLF FMETSALDAT NVDKAFEIVI REIFNNVSRK LLNSDAYKAE LSVNRVSLVN
201: NQDGSESSWR NPSCCSR

Arabidopsis Description

RABA5BRas-related protein RABA5b [Source:UniProtKB/Swiss-Prot;Acc:Q9SRS5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.