Factsheet for Bra000290.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83500	Canola	cytosol	99.53	99.53
AT2G43130.1	Thale cress	cytosol	96.71	96.26
Bra004747.1-P	Field mustard	cytosol	92.02	92.02
Bra005650.1-P	Field mustard	cytosol	85.45	83.11
Bra022861.1-P	Field mustard	cytosol	83.1	81.19
Bra032453.1-P	Field mustard	cytosol	82.63	80.73
Zm00001d031562_P001	Maize	cytosol	46.01	79.03
Solyc09g097900.2.1	Tomato	cytosol	78.87	77.78
TraesCS7A01G256000.1	Wheat	cytosol	78.87	77.42
PGSC0003DMT400042789	Potato	cytosol	78.4	77.31
Bra040376.1-P	Field mustard	cytosol	77.0	77.0
TraesCS7B01G152600.1	Wheat	cytosol	78.4	76.96
TraesCS7D01G254400.1	Wheat	cytosol	77.93	76.5
GSMUA_Achr11P...	Banana	cytosol	77.46	76.39
OQU80857	Sorghum	cytosol	77.0	75.93
Os08t0525000-01	Rice	plasma membrane	77.0	75.93
HORVU7Hr1G052840.3	Barley	cytosol	77.93	75.8
GSMUA_Achr11P...	Banana	cytosol	74.18	72.81
KRH55234	Soybean	cytosol	23.47	64.1
Bra024937.1-P	Field mustard	cytosol	63.38	60.81
Bra022136.1-P	Field mustard	cytosol	62.91	60.63
Bra017482.1-P	Field mustard	cytosol	62.44	59.91
Bra012576.1-P	Field mustard	cytosol	52.11	51.63
Bra025060.1-P	Field mustard	cytosol	52.11	51.39
Bra016565.1-P	Field mustard	cytosol	50.7	47.79
Bra015978.1-P	Field mustard	cytosol	48.83	44.83
Bra016699.1-P	Field mustard	cytosol, mitochondrion	21.13	36.0

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra000290	EnsemblPlants:Bra000290.1	EnsemblPlants:Bra000290.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4C7W2	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF884	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000253FCDB	:	:

Description

AT2G43130 (E=1e-112) ARA4, ATRAB11F, ATRABA5C, ARA-4, RABA5C | ARA4; GTP binding / GTPase/ protein binding

Coordinates

chrA03:-:10361482..10362205

Molecular Weight (calculated)

23568.7 Da

IEP (calculated)

4.744

GRAVY (calculated)

-0.327

Length

213 amino acids

Sequence
(BLAST)

001: MSDDEGGEEY LFKIVIIGDS AVGKSNLLTR YARNEFNPNS KATIGVEFQT QSMVIDGKEV KAQIWDTAGQ ERFRAVTSAY YRGAVGALVV YDITRSSTFE
101: NVGRWLDELN THSDTTVAKM LIGNKCDLES IRAVSVEEGK GLAESQGLFF METSALGSTN VKTAFEMVIR EIYSNISRKQ LNSDSYKEEL TVNRVSLVKS
201: ENEGTKTFSC CSS

Best Arabidopsis Sequence Match ( AT2G43130.1 )
(BLAST)

001: MSDDDERGEE YLFKIVIIGD SAVGKSNLLT RYARNEFNPN SKATIGVEFQ TQSMLIDGKE VKAQIWDTAG QERFRAVTSA YYRGAVGALV VYDITRSSTF
101: ENVGRWLDEL NTHSDTTVAK MLIGNKCDLE SIRAVSVEEG KSLAESEGLF FMETSALDST NVKTAFEMVI REIYSNISRK QLNSDSYKEE LTVNRVSLVK
201: NENEGTKTFS CCSR

Arabidopsis Description

RABA5CRas-related protein RABA5c [Source:UniProtKB/Swiss-Prot;Acc:P28187]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.