Factsheet for Bra004747.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70114	Canola	cytosol	100.0	100.0
AT2G43130.1	Thale cress	cytosol	94.37	93.93
Bra000290.1-P	Field mustard	cytosol	92.02	92.02
Bra005650.1-P	Field mustard	cytosol	82.63	80.37
Bra032453.1-P	Field mustard	cytosol	80.75	78.9
Bra022861.1-P	Field mustard	cytosol	80.28	78.44
Zm00001d031562_P001	Maize	cytosol	45.54	78.23
Solyc09g097900.2.1	Tomato	cytosol	78.4	77.31
PGSC0003DMT400042789	Potato	cytosol	77.93	76.85
Bra040376.1-P	Field mustard	cytosol	75.12	75.12
TraesCS7A01G256000.1	Wheat	cytosol	76.53	75.12
TraesCS7B01G152600.1	Wheat	cytosol	76.06	74.65
TraesCS7D01G254400.1	Wheat	cytosol	75.59	74.19
GSMUA_Achr11P...	Banana	cytosol	75.12	74.07
HORVU7Hr1G052840.3	Barley	cytosol	76.06	73.97
OQU80857	Sorghum	cytosol	74.65	73.61
Os08t0525000-01	Rice	plasma membrane	74.65	73.61
GSMUA_Achr11P...	Banana	cytosol	72.3	70.97
KRH55234	Soybean	cytosol	24.41	66.67
Bra024937.1-P	Field mustard	cytosol	62.91	60.36
Bra022136.1-P	Field mustard	cytosol	62.44	60.18
Bra017482.1-P	Field mustard	cytosol	61.97	59.46
Bra012576.1-P	Field mustard	cytosol	53.05	52.56
Bra025060.1-P	Field mustard	cytosol	52.11	51.39
Bra016565.1-P	Field mustard	cytosol	50.7	47.79
Bra015978.1-P	Field mustard	cytosol	50.23	46.12
Bra016699.1-P	Field mustard	cytosol, mitochondrion	21.13	36.0

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra004747	EnsemblPlants:Bra004747.1	EnsemblPlants:Bra004747.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4CKL2	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF884	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002547A84	:	:

Description

AT2G43130 (E=2e-110) ARA4, ATRAB11F, ATRABA5C, ARA-4, RABA5C | ARA4; GTP binding / GTPase/ protein binding

Coordinates

chrA05:-:1630069..1631045

Molecular Weight (calculated)

23814.9 Da

IEP (calculated)

4.751

GRAVY (calculated)

-0.385

Length

213 amino acids

Sequence
(BLAST)

001: MSDDERCEEY LFKIVIIGDS AVGKSNLLTR YARNEFNPNS KATIGVEFQT QSMLIDNKEV KAQIWDTAGQ ERFRAVTSAY YRGAVGALVV YDITRTSTFE
101: NVGRWLDELN THSDTTVAKM LIGNKCDLES IRAVSIEEGK SLAESQGLFF METSALDSTN VSTAFEMVIR DIYGNISRKQ LNSDSYKEEV TGNRVSLVKN
201: ESEGTKSFSC CSR

Best Arabidopsis Sequence Match ( AT2G43130.1 )
(BLAST)

001: MSDDDERGEE YLFKIVIIGD SAVGKSNLLT RYARNEFNPN SKATIGVEFQ TQSMLIDGKE VKAQIWDTAG QERFRAVTSA YYRGAVGALV VYDITRSSTF
101: ENVGRWLDEL NTHSDTTVAK MLIGNKCDLE SIRAVSVEEG KSLAESEGLF FMETSALDST NVKTAFEMVI REIYSNISRK QLNSDSYKEE LTVNRVSLVK
201: NENEGTKTFS CCSR

Arabidopsis Description

RABA5CRas-related protein RABA5c [Source:UniProtKB/Swiss-Prot;Acc:P28187]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.