Factsheet for Bra005650.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55745	Canola	cytosol	100.0	100.0
AT2G31680.1	Thale cress	cytosol	94.06	94.06
Bra022861.1-P	Field mustard	cytosol	91.32	91.74
Bra000290.1-P	Field mustard	cytosol	83.11	85.45
Bra032453.1-P	Field mustard	cytosol	84.02	84.4
Bra004747.1-P	Field mustard	cytosol	80.37	82.63
Solyc09g097900.2.1	Tomato	cytosol	76.71	77.78
PGSC0003DMT400042789	Potato	cytosol	76.26	77.31
Zm00001d031562_P001	Maize	cytosol	43.38	76.61
GSMUA_Achr11P...	Banana	cytosol	74.89	75.93
TraesCS7D01G254400.1	Wheat	cytosol	74.89	75.58
TraesCS7A01G256000.1	Wheat	cytosol	74.89	75.58
Bra040376.1-P	Field mustard	cytosol	73.06	75.12
TraesCS7B01G152600.1	Wheat	cytosol	74.43	75.12
Os08t0525000-01	Rice	plasma membrane	73.52	74.54
HORVU7Hr1G052840.3	Barley	cytosol	74.43	74.43
OQU80857	Sorghum	cytosol	73.06	74.07
GSMUA_Achr11P...	Banana	cytosol	71.69	72.35
KRH55234	Soybean	cytosol	22.83	64.1
Bra024937.1-P	Field mustard	cytosol	62.1	61.26
Bra017482.1-P	Field mustard	cytosol	62.1	61.26
Bra022136.1-P	Field mustard	cytosol	61.64	61.09
Bra012576.1-P	Field mustard	cytosol	48.86	49.77
Bra025060.1-P	Field mustard	cytosol	48.4	49.07
Bra016565.1-P	Field mustard	cytosol	48.4	46.9
Bra015978.1-P	Field mustard	cytosol	46.12	43.53
Bra016699.1-P	Field mustard	cytosol, mitochondrion	18.72	32.8

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra005650	EnsemblPlants:Bra005650.1	EnsemblPlants:Bra005650.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4CN62	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF884	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00025478DE	:	:

Description

AT2G31680 (E=2e-114) AtRABA5d | AtRABA5d (Arabidopsis Rab GTPase homolog A5d); GTP binding

Coordinates

chrA05:+:6762666..6764307

Molecular Weight (calculated)

24337.5 Da

IEP (calculated)

5.155

GRAVY (calculated)

-0.384

Length

219 amino acids

Sequence
(BLAST)

001: MSSDDEGGEE YLFKIVIIGD SAVGKSNLLS RYARNEFNAH SKATIGVEFQ TQSMEIEGKE VRAQIWDTAG QERFRAVTSA YYRGAVGAFV VYDISRRTTF
101: ESVGRWLDEL KTHSDTTVAR MLVGNKCDLE SMRAVSVEEG KALAETQGLF FMETSALDST NVKTAFEMVI RDIYTNISRK QLNSDTYKTQ LGSNNRVSLV
201: KDDNKGSSQV FGFSCCSSS

Best Arabidopsis Sequence Match ( AT2G31680.1 )
(BLAST)

001: MSSDDEGGEE YLFKIVIIGD SAVGKSNLLS RYARNEFNAH SKATIGVEFQ TQNMEIEGKE VKAQIWDTAG QERFRAVTSA YYRGAVGALV VYDISRRSTF
101: ESVGRWLDEL KTHSDTTVAR MLVGNKCDLE SIRAVSVEEG KALAETEGLF FMETSALDST NVKTAFEMVI RDIYTNISRK QLNSDTYKTE LSMKNRVSLV
201: KDDNKSSTQG FGFSCCSSS

Arabidopsis Description

RABA5DRas-related protein RABA5d [Source:UniProtKB/Swiss-Prot;Acc:Q9SIP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.