CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000290.1-P	Field mustard	cytosol	99.53	99.53
CDY42801	Canola	cytosol	97.65	97.65
AT2G43130.1	Thale cress	cytosol	96.71	96.26
CDY17945	Canola	cytosol	93.43	93.43
CDY70114	Canola	cytosol	92.02	92.02
CDY55745	Canola	cytosol	85.45	83.11
CDX79430	Canola	cytosol	83.57	81.28
CDX84764	Canola	cytosol	83.57	81.28
Zm00001d031562_P001	Maize	cytosol	46.01	79.03
Solyc09g097900.2.1	Tomato	cytosol	78.87	77.78
TraesCS7A01G256000.1	Wheat	cytosol	78.87	77.42
PGSC0003DMT400042789	Potato	cytosol	78.4	77.31
TraesCS7B01G152600.1	Wheat	cytosol	78.4	76.96
TraesCS7D01G254400.1	Wheat	cytosol	77.93	76.5
GSMUA_Achr11P...	Banana	cytosol	77.46	76.39
Os08t0525000-01	Rice	plasma membrane	77.0	75.93
OQU80857	Sorghum	cytosol	77.0	75.93
HORVU7Hr1G052840.3	Barley	cytosol	77.93	75.8
GSMUA_Achr11P...	Banana	cytosol	74.18	72.81
CDY06181	Canola	cytosol	82.63	72.43
CDY10008	Canola	mitochondrion	82.63	67.18
KRH55234	Soybean	cytosol	23.47	64.1
CDY65720	Canola	extracellular	38.97	63.85
CDX77774	Canola	cytosol	63.38	61.09
CDY17729	Canola	cytosol	63.38	61.09
CDY25963	Canola	cytosol	61.97	60.27
CDY40561	Canola	cytosol	62.44	60.18
CDY41053	Canola	cytosol	62.44	59.91
CDY28925	Canola	cytosol	61.97	59.73
CDX77609	Canola	cytosol, plasma membrane	52.58	51.85
CDY39445	Canola	cytosol	52.58	51.85
CDY54837	Canola	cytosol	15.49	51.56
CDX96730	Canola	cytosol	50.7	47.79
CDY51631	Canola	cytosol	22.54	47.52
CDX83861	Canola	cytosol	50.23	47.35
CDX72997	Canola	cytosol	49.3	45.65
CDX83007	Canola	cytosol	23.47	44.64
CDX96853	Canola	mitochondrion	27.23	38.67

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:A0A078D2Z5	EnsemblPlants:CDX83500	ProteinID:CDX83500	ProteinID:CDX83500.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00139092001	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF884	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0004EE4038	:

Description

BnaA03g20060D

Coordinates

chrLK031832:+:1827564..1828411

Molecular Weight (calculated)

23582.7 Da

IEP (calculated)

4.744

GRAVY (calculated)

-0.326

Length

213 amino acids

Sequence
(BLAST)

001: MSDDEGGEEY LFKIVIIGDS AVGKSNLLTR YARNEFNPNS KATIGVEFQT QSMIIDGKEV KAQIWDTAGQ ERFRAVTSAY YRGAVGALVV YDITRSSTFE
101: NVGRWLDELN THSDTTVAKM LIGNKCDLES IRAVSVEEGK GLAESQGLFF METSALGSTN VKTAFEMVIR EIYSNISRKQ LNSDSYKEEL TVNRVSLVKS
201: ENEGTKTFSC CSS

Best Arabidopsis Sequence Match ( AT2G43130.1 )
(BLAST)

001: MSDDDERGEE YLFKIVIIGD SAVGKSNLLT RYARNEFNPN SKATIGVEFQ TQSMLIDGKE VKAQIWDTAG QERFRAVTSA YYRGAVGALV VYDITRSSTF
101: ENVGRWLDEL NTHSDTTVAK MLIGNKCDLE SIRAVSVEEG KSLAESEGLF FMETSALDST NVKTAFEMVI REIYSNISRK QLNSDSYKEE LTVNRVSLVK
201: NENEGTKTFS CCSR

Arabidopsis Description

RABA5CRas-related protein RABA5c [Source:UniProtKB/Swiss-Prot;Acc:P28187]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.