CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83500	Canola	cytosol	97.65	97.65
AT2G43130.1	Thale cress	cytosol	97.18	96.73
CDY17945	Canola	cytosol	93.43	93.43
CDY70114	Canola	cytosol	92.02	92.02
CDY55745	Canola	cytosol	84.98	82.65
CDX79430	Canola	cytosol	83.1	80.82
CDX84764	Canola	cytosol	83.1	80.82
Zm00001d031562_P001	Maize	cytosol	46.01	79.03
Solyc09g097900.2.1	Tomato	cytosol	78.87	77.78
TraesCS7A01G256000.1	Wheat	cytosol	78.87	77.42
PGSC0003DMT400042789	Potato	cytosol	78.4	77.31
TraesCS7B01G152600.1	Wheat	cytosol	78.4	76.96
GSMUA_Achr11P...	Banana	cytosol	77.93	76.85
TraesCS7D01G254400.1	Wheat	cytosol	77.93	76.5
OQU80857	Sorghum	cytosol	77.0	75.93
Os08t0525000-01	Rice	plasma membrane	77.0	75.93
HORVU7Hr1G052840.3	Barley	cytosol	77.93	75.8
GSMUA_Achr11P...	Banana	cytosol	74.18	72.81
CDY06181	Canola	cytosol	82.16	72.02
CDY10008	Canola	mitochondrion	82.16	66.79
KRH55234	Soybean	cytosol	23.94	65.38
CDY65720	Canola	extracellular	38.5	63.08
CDY17729	Canola	cytosol	62.91	60.63
CDX77774	Canola	cytosol	62.91	60.63
CDY40561	Canola	cytosol	62.44	60.18
CDY25963	Canola	cytosol	61.5	59.82
CDY28925	Canola	cytosol	61.97	59.73
CDY41053	Canola	cytosol	61.97	59.46
CDY54837	Canola	cytosol	15.49	51.56
CDY39445	Canola	cytosol	52.11	51.39
CDX77609	Canola	cytosol, plasma membrane	52.11	51.39
CDY51631	Canola	cytosol	22.54	47.52
CDX96730	Canola	cytosol	50.23	47.35
CDX83861	Canola	cytosol	49.77	46.9
CDX72997	Canola	cytosol	48.83	45.22
CDX83007	Canola	cytosol	23.47	44.64
CDX96853	Canola	mitochondrion	26.76	38.0

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:A0A078HYQ5	UniProt:A0A078HYQ5	EnsemblPlants:CDY42801	ProteinID:CDY42801
ProteinID:CDY42801.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00075476001	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF884	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0004EEF52F

Description

BnaC03g24050DBnaC03g24050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYQ5]

Coordinates

chrLK032535:+:57947..58780

Molecular Weight (calculated)

23696.8 Da

IEP (calculated)

4.755

GRAVY (calculated)

-0.358

Length

213 amino acids

Sequence
(BLAST)

001: MSDDEGGEEY LFKIVIIGDS AVGKSNLLTR YARNEFNPNS KATIGVEFQT QSMVIDGKEV KAQIWDTAGQ ERFRAVTSAY YRGAVGALVV YDITRSSTFE
101: NVGRWLDELN THSDTTVAKM LIGNKCDLES IRAVSVEEGK GLAESHGFFF METSALDSTN VKTAFEMVIR EIYSNISRKQ LNSDSYKEEL TVNRVSLVKN
201: ENEGTKTFSC CSS

Best Arabidopsis Sequence Match ( AT2G43130.1 )
(BLAST)

001: MSDDDERGEE YLFKIVIIGD SAVGKSNLLT RYARNEFNPN SKATIGVEFQ TQSMLIDGKE VKAQIWDTAG QERFRAVTSA YYRGAVGALV VYDITRSSTF
101: ENVGRWLDEL NTHSDTTVAK MLIGNKCDLE SIRAVSVEEG KSLAESEGLF FMETSALDST NVKTAFEMVI REIYSNISRK QLNSDSYKEE LTVNRVSLVK
201: NENEGTKTFS CCSR

Arabidopsis Description

RABA5CRas-related protein RABA5c [Source:UniProtKB/Swiss-Prot;Acc:P28187]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.