CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015978.1-P	Field mustard	cytosol	98.26	97.41
AT1G73640.1	Thale cress	cytosol	91.3	90.13
CDX83861	Canola	cytosol	79.57	80.97
CDX96730	Canola	cytosol	79.13	80.53
KRH48616	Soybean	cytosol	25.65	79.73
VIT_17s0000g02500.t01	Wine grape	cytosol	72.17	76.15
KRH41826	Soybean	cytosol	66.09	69.72
PGSC0003DMT400014741	Potato	cytosol	66.96	69.06
KRH39102	Soybean	cytosol	53.91	68.89
KRH60507	Soybean	cytosol	64.78	68.66
Solyc03g118820.2.1	Tomato	plastid	67.39	64.05
KRH48618	Soybean	cytosol	39.57	63.64
CDY54837	Canola	cytosol	16.52	59.38
CDX77609	Canola	cytosol, plasma membrane	53.91	57.41
CDY39445	Canola	cytosol	53.91	57.41
CDY70114	Canola	cytosol	46.52	50.23
CDY17945	Canola	cytosol	46.52	50.23
CDY25963	Canola	cytosol	47.39	49.77
CDY28925	Canola	cytosol	47.39	49.32
CDY40561	Canola	cytosol	47.39	49.32
CDY17729	Canola	cytosol	47.39	49.32
CDX77774	Canola	cytosol	47.39	49.32
CDX83500	Canola	cytosol	45.65	49.3
CDY41053	Canola	cytosol	47.39	49.1
CDY42801	Canola	cytosol	45.22	48.83
CDY51631	Canola	cytosol	21.3	48.51
CDX79430	Canola	cytosol	45.22	47.49
CDX84764	Canola	cytosol	45.22	47.49
CDY55745	Canola	cytosol	44.35	46.58
CDY06181	Canola	cytosol	46.96	44.44
CDX83007	Canola	cytosol	21.3	43.75
CDX96853	Canola	mitochondrion	28.26	43.33
CDY10008	Canola	mitochondrion	46.52	40.84
CDY65720	Canola	extracellular	16.52	29.23

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:A0A078C815	EnsemblPlants:CDX72997	ProteinID:CDX72997	ProteinID:CDX72997.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00103435001
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF544
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0004EE7D92	SEG:seg	:	:

Description

BnaC06g34450DRas-related protein RABA6a [Source:Projected from Arabidopsis thaliana (AT1G73640) UniProtKB/Swiss-Prot;Acc:Q9C9U7]

Coordinates

chrLK031797:+:1583045..1584509

Molecular Weight (calculated)

25711.3 Da

IEP (calculated)

4.921

GRAVY (calculated)

-0.275

Length

230 amino acids

Sequence
(BLAST)

001: MAEDSYDEEC DYLFKSVLIG DSAVGKSNLL SRFSKDEFRL DSKPTIGVEF AYRNVHVGDK IIKAQIWDTA GQERFRAITS SYYRGALGAL LIYDVTRRTT
101: FENIKKWLFE LREFANPDTV VVLVGNKSDL RQSREVEEEE GKSLAESEGL CFLETSALEN VNVEEAFLVM IKRIHEVVTQ RIASDNKSNG VATTHVNGNG
201: TVVPVGKEIV NIHEVTATQP VSSSSKCCFQ

Best Arabidopsis Sequence Match ( AT1G73640.1 )
(BLAST)

001: MAEDTYEEEC DYLFKAVLIG DSAVGKSNLL SRFSKDEFRF DSKPTIGVEF AYRNVHVGDK IIKAQIWDTA GQERFRAITS SYYRGALGAL LIYDITRRTT
101: FDNIKKWLFE LRDFANPETV VVLVGNKSDL RQSREVEEDE GKTLAESEGL YFLETSALEN VNVEEAFLVM IGRIHEVVTQ RIASENKSNG AATPHINGNG
201: NGTVLPVGKE IVNIHEVTAT QPLLSSSSNC CFK

Arabidopsis Description

RABA6ARas-related protein RABA6a [Source:UniProtKB/Swiss-Prot;Acc:Q9C9U7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.