Factsheet for Solyc03g118820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014741	Potato	cytosol	88.43	95.96
KRH48616	Soybean	cytosol	23.55	77.03
VIT_17s0000g02500.t01	Wine grape	cytosol	69.01	76.61
KRH41826	Soybean	cytosol	62.81	69.72
KRH60507	Soybean	cytosol	62.4	69.59
KRH39102	Soybean	cytosol	51.24	68.89
CDX72997	Canola	cytosol	64.05	67.39
Bra015978.1-P	Field mustard	cytosol	63.64	66.38
KRH48618	Soybean	cytosol	38.84	65.73
AT1G18200.1	Thale cress	cytosol	61.98	65.5
AT1G73640.1	Thale cress	cytosol	62.4	64.81
CDX96730	Canola	cytosol	60.33	64.6
Bra016565.1-P	Field mustard	cytosol	60.33	64.6
CDX83861	Canola	cytosol	59.92	64.16
Solyc10g050030.1.1	Tomato	cytosol	17.77	54.43
Solyc09g056340.2.1	Tomato	cytosol	45.87	52.86
Solyc09g097900.2.1	Tomato	cytosol	45.04	50.46
Solyc09g098170.2.1	Tomato	plastid	44.21	49.31
Solyc05g054150.2.1	Tomato	cytosol	45.04	48.23
Solyc11g012460.1.1	Tomato	plastid	44.21	38.77

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0016787	UniProt:K4BM31	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF857	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	EnsemblPlantsGene:Solyc03g118820.2
EnsemblPlants:Solyc03g118820.2.1	TIGRFAMs:TIGR00231	UniParc:UPI00027661A7	:	:	:

Description

No Description!

Coordinates

chr3:+:67626322..67629418

Molecular Weight (calculated)

27514.7 Da

IEP (calculated)

5.179

GRAVY (calculated)

-0.301

Length

242 amino acids

Sequence
(BLAST)

001: MSSIAAISKE SSWLWFHIYM DDSFDEECDY LFKSVLVGDS AVGKSNLLSR FARDQFQFDS KPTIGVEFAY KNIRVGDKLI KAQIWDTAGQ ERFRAITSSY
101: YRGALGALLV YDITRRTTFE NLRKWLHELR EYGNSDMVIV LVGNKSDLSN SSRQVNIEDG QSLAQVEGLS FLETSAMENL NVEEAFLQMI NKIHEVVSQK
201: SLEAKLNEVT TPKSLQQGKK LEIINMMNSE VTATKQNVNC CY

Best Arabidopsis Sequence Match ( AT1G73640.1 )
(BLAST)

001: MAEDTYEEEC DYLFKAVLIG DSAVGKSNLL SRFSKDEFRF DSKPTIGVEF AYRNVHVGDK IIKAQIWDTA GQERFRAITS SYYRGALGAL LIYDITRRTT
101: FDNIKKWLFE LRDFANPETV VVLVGNKSDL RQSREVEEDE GKTLAESEGL YFLETSALEN VNVEEAFLVM IGRIHEVVTQ RIASENKSNG AATPHINGNG
201: NGTVLPVGKE IVNIHEVTAT QPLLSSSSNC CFK

Arabidopsis Description

RABA6ARas-related protein RABA6a [Source:UniProtKB/Swiss-Prot;Acc:Q9C9U7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.