Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96730 | Canola | cytosol | 86.46 | 87.61 |
| Bra016565.1-P | Field mustard | cytosol | 86.46 | 87.61 |
| CDX83861 | Canola | cytosol | 86.03 | 87.17 |
| AT1G73640.1 | Thale cress | cytosol | 83.41 | 81.97 |
| KRH48616 | Soybean | cytosol | 24.89 | 77.03 |
| VIT_17s0000g02500.t01 | Wine grape | cytosol | 72.05 | 75.69 |
| KRH39102 | Soybean | cytosol | 53.28 | 67.78 |
| KRH60507 | Soybean | cytosol | 64.19 | 67.74 |
| PGSC0003DMT400014741 | Potato | cytosol | 65.94 | 67.71 |
| KRH41826 | Soybean | cytosol | 64.19 | 67.43 |
| KRH48618 | Soybean | cytosol | 39.3 | 62.94 |
| Solyc03g118820.2.1 | Tomato | plastid | 65.5 | 61.98 |
| AT5G47520.1 | Thale cress | cytosol | 49.78 | 51.58 |
| AT3G07410.1 | Thale cress | cytosol | 48.03 | 50.69 |
| AT2G43130.1 | Thale cress | cytosol | 47.16 | 50.47 |
| AT2G31680.1 | Thale cress | cytosol | 46.72 | 48.86 |
| AT1G05810.2 | Thale cress | plastid | 47.6 | 41.29 |
Protein Annotations
| MapMan:22.8.1.1 | Gene3D:3.40.50.300 | EntrezGene:838399 | UniProt:A0A178WEX4 | ProteinID:AAF78385.1 | ProteinID:AAF97836.1 |
| ProteinID:AEE29686.1 | EMBL:AK228658 | ArrayExpress:AT1G18200 | EnsemblPlantsGene:AT1G18200 | RefSeq:AT1G18200 | TAIR:AT1G18200 |
| RefSeq:AT1G18200-TAIR-G | EnsemblPlants:AT1G18200.1 | TAIR:AT1G18200.1 | Symbol:AtRABA6b | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016787 | RefSeq:NP_173258.2 | ProteinID:OAP16960.1 | InterPro:P-loop_NTPase |
| PFAM:PF00071 | PO:PO:0000293 | PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF625 |
| UniProt:Q0WQN4 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 | SUPFAM:SSF52540 |
| InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI000150578C | : | : |
Description
RABA6BRABA6b [Source:UniProtKB/TrEMBL;Acc:A0A178WEX4]
Coordinates
chr1:-:6265416..6267076
Molecular Weight (calculated)
25618.2 Da
IEP (calculated)
4.661
GRAVY (calculated)
-0.359
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEESYDEEC DYLFKAVLIG DSAVGKSNLL SRFSRDEFRL DSKPTIGVDF AYRNVRVGDK TIKAQIWDTA GQERFRAITS SYYRGALGAL LIYDITRRIT
101: FKNIEKWLSE LRGFSSPETV VVLVGNKSDL GQSREVEEEE GKTLAESEGL YFLETSALEN QNVEEAFLSM IGRIHEVLTQ KIVLDNRLNG DGNNESNGAV
201: VPPGKEIVNI HEVTATRPLS TSLSNCCYK
101: FKNIEKWLSE LRGFSSPETV VVLVGNKSDL GQSREVEEEE GKTLAESEGL YFLETSALEN QNVEEAFLSM IGRIHEVLTQ KIVLDNRLNG DGNNESNGAV
201: VPPGKEIVNI HEVTATRPLS TSLSNCCYK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.