Factsheet for VIT_17s0000g02500.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48616	Soybean	cytosol	28.9	85.14
KRH41826	Soybean	cytosol	79.36	79.36
KRH60507	Soybean	cytosol	77.06	77.42
PGSC0003DMT400014741	Potato	cytosol	77.06	75.34
KRH39102	Soybean	cytosol	61.01	73.89
CDX72997	Canola	cytosol	76.15	72.17
AT1G18200.1	Thale cress	cytosol	75.69	72.05
KRH48618	Soybean	cytosol	46.79	71.33
Bra015978.1-P	Field mustard	cytosol	75.69	71.12
AT1G73640.1	Thale cress	cytosol	75.23	70.39
CDX96730	Canola	cytosol	72.94	70.35
CDX83861	Canola	cytosol	72.94	70.35
Bra016565.1-P	Field mustard	cytosol	72.94	70.35
Solyc03g118820.2.1	Tomato	plastid	76.61	69.01
VIT_10s0003g01620.t01	Wine grape	cytosol	24.31	60.92
VIT_07s0141g00770.t01	Wine grape	cytosol	51.83	52.56
VIT_05s0062g00840.t01	Wine grape	cytosol	50.0	50.7
VIT_00s0625g00030.t01	Wine grape	cytosol	24.77	50.0

Protein Annotations

EntrezGene:100242285	wikigene:100242285	MapMan:22.8.1.1	Gene3D:3.40.50.300	ProteinID:CBI15560	ProteinID:CBI15560.3
UniProt:D7SJ99	EMBL:FN594950	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0016787	EntrezGene:LOC100242285	wikigene:LOC100242285	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF872	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGR:TC63069
TIGRFAMs:TIGR00231	UniParc:UPI00015C9740	ArrayExpress:VIT_17s0000g02500	EnsemblPlantsGene:VIT_17s0000g02500	EnsemblPlants:VIT_17s0000g02500.t01	unigene:Vvi.14689
RefSeq:XP_002281955	RefSeq:XP_002281955.1	:	:	:	:

Description

No Description!

Coordinates

chr17:+:2282138..2286605

Molecular Weight (calculated)

24609.4 Da

IEP (calculated)

5.427

GRAVY (calculated)

-0.318

Length

218 amino acids

Sequence
(BLAST)

001: MAADSFDDEC DYLFKAVLIG DSAVGKSNLL SRFSRDEFRL DSKPTIGVEF AYRNIKVGDK LIKAQIWDTA GQERFRAITS SYYRGALGAL LVYDITRRAT
101: FENLKKWLRE LRDFGKPDMV IVLVGNKSDL GHSREVDEEE GKTLAETEGL CFMETSALEN LNVEEAFLHM ITKIHEVTSQ KNLEAKLNEP VKPLIIGKEI
201: IHVDHEVSAT KQSSCCSR

Best Arabidopsis Sequence Match ( AT1G18200.1 )
(BLAST)

001: MAEESYDEEC DYLFKAVLIG DSAVGKSNLL SRFSRDEFRL DSKPTIGVDF AYRNVRVGDK TIKAQIWDTA GQERFRAITS SYYRGALGAL LIYDITRRIT
101: FKNIEKWLSE LRGFSSPETV VVLVGNKSDL GQSREVEEEE GKTLAESEGL YFLETSALEN QNVEEAFLSM IGRIHEVLTQ KIVLDNRLNG DGNNESNGAV
201: VPPGKEIVNI HEVTATRPLS TSLSNCCYK

Arabidopsis Description

RABA6BRABA6b [Source:UniProtKB/TrEMBL;Acc:A0A178WEX4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.