Factsheet for VIT_05s0062g00840.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P06080_001	Banana	plasma membrane	85.12	85.51
GSMUA_Achr8P28380_001	Banana	cytosol	74.42	85.11
VIT_07s0141g00770.t01	Wine grape	cytosol	83.26	83.26
VIT_10s0003g01620.t01	Wine grape	cytosol	23.26	57.47
VIT_00s0625g00030.t01	Wine grape	cytosol	26.05	51.85
VIT_17s0000g02500.t01	Wine grape	cytosol	50.7	50.0

Protein Annotations

EntrezGene:100266853	wikigene:100266853	MapMan:22.8.1.1	Gene3D:3.40.50.300	UniProt:A5C9K9	EMBL:AM487097
ProteinID:CAN66526	ProteinID:CAN66526.1	ProteinID:CCB61802	ProteinID:CCB61802.1	EMBL:FN596745	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
EntrezGene:LOC100266853	wikigene:LOC100266853	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF884	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00015227E1	ArrayExpress:VIT_05s0062g00840
EnsemblPlantsGene:VIT_05s0062g00840	EnsemblPlants:VIT_05s0062g00840.t01	unigene:Vvi.18994	RefSeq:XP_002264559	RefSeq:XP_002264559.2	:

Description

No Description!

Coordinates

chr5:+:19277973..19281226

Molecular Weight (calculated)

23912.0 Da

IEP (calculated)

4.787

GRAVY (calculated)

-0.353

Length

215 amino acids

Sequence
(BLAST)

001: MEDEEGEEYL FKVVIIGDSA VGKSNLLSRY ARNEFNINSK ATIGVEFQTQ SMEIDGKEVK AQIWDTAGQE RFRAVTSAYY RGAVGALVVY DISRRSTFDS
101: VARWLDELKT HSETTVARML VGNKSDLENI RDVSVEEGKS LAEAEGLFFI ETSALDSTNV KKAFEIVIRE IYNNISRKVL NSDSYKAELS VNRVSLVSNG
201: ADGAKQANSR YSCCS

Best Arabidopsis Sequence Match ( AT2G43130.1 )
(BLAST)

001: MSDDDERGEE YLFKIVIIGD SAVGKSNLLT RYARNEFNPN SKATIGVEFQ TQSMLIDGKE VKAQIWDTAG QERFRAVTSA YYRGAVGALV VYDITRSSTF
101: ENVGRWLDEL NTHSDTTVAK MLIGNKCDLE SIRAVSVEEG KSLAESEGLF FMETSALDST NVKTAFEMVI REIYSNISRK QLNSDSYKEE LTVNRVSLVK
201: NENEGTKTFS CCSR

Arabidopsis Description

RABA5CRas-related protein RABA5c [Source:UniProtKB/Swiss-Prot;Acc:P28187]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.