Factsheet for PGSC0003DMT400034567

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021794	Potato	cytosol	90.22	89.82
KRH34233	Soybean	cytosol	85.78	86.55
KRG92561	Soybean	cytosol	85.78	85.4
AT5G47520.1	Thale cress	cytosol	83.11	84.62
CDY25963	Canola	cytosol	81.78	84.02
CDY17729	Canola	cytosol	82.22	83.71
CDY41053	Canola	cytosol	82.22	83.33
Bra024937.1-P	Field mustard	cytosol	82.22	83.33
Bra017482.1-P	Field mustard	cytosol	82.22	83.33
CDX77774	Canola	cytosol	81.33	82.81
CDY40561	Canola	cytosol	80.44	81.9
Bra022136.1-P	Field mustard	cytosol	80.44	81.9
CDY28925	Canola	cytosol	80.0	81.45
Os07t0634200-01	Rice	plasma membrane	77.78	79.55
GSMUA_Achr2P15860_001	Banana	cytosol	78.67	79.02
EER97606	Sorghum	cytosol	77.78	78.83
GSMUA_Achr6P00700_001	Banana	cytosol	76.89	78.64
Solyc11g012460.1.1	Tomato	plastid	96.44	78.62
Zm00001d022251_P002	Maize	cytosol	77.33	78.38
HORVU2Hr1G027660.2	Barley	cytosol	76.0	76.68
TraesCS2A01G153500.1	Wheat	cytosol	76.0	76.68
TraesCS2D01G158800.1	Wheat	cytosol	76.0	76.68
GSMUA_Achr5P06170_001	Banana	cytosol	56.0	74.56
TraesCS2B01G178600.1	Wheat	cytosol	73.78	70.64
PGSC0003DMT400013853	Potato	cytosol	59.56	63.81
PGSC0003DMT400042789	Potato	cytosol	60.89	63.43
PGSC0003DMT400031071	Potato	cytosol	60.0	62.21
PGSC0003DMT400014741	Potato	cytosol	47.56	47.98

Protein Annotations

EntrezGene:102592472	MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M1B0X3	InterPro:P-loop_NTPase
PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400013287	PGSC:PGSC0003DMG400013287	EnsemblPlants:PGSC0003DMT400034567	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF430	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000294BA20	RefSeq:XP_006352344.1
RefSeq:XP_006352345.1	RefSeq:XP_015166394.1	RefSeq:XP_015166395.1	:	:	:

Description

Guanine nucleotide regulatory protein [Source:PGSC_GENE;Acc:PGSC0003DMG400013287]

Coordinates

chr11:-:420004..424301

Molecular Weight (calculated)

25096.6 Da

IEP (calculated)

5.461

GRAVY (calculated)

-0.360

Length

225 amino acids

Sequence
(BLAST)

001: MAFRSEEAQT EDYLFKIVLI GDSAVGKSNL LARFARDEFY PNSKSTIGVE FQTQKLDING KEVKAQIWDT AGQERFRAVT SAYYRGAVGA LLVYDISRRL
101: TFENIGRWLN ELQTHSDMNV VTILVGNKSD LKDAREVTTA EGKSLAEAQG LFFIETSALD SSNVAVAFQT VVKEIYNILS RKVMQSQELQ KKDSGRLANG
201: KTVVLQADEN QETETQAKKG WCCSS

Best Arabidopsis Sequence Match ( AT5G47520.1 )
(BLAST)

001: MAFYSEDDKS EDYLFKIVLI GDSAVGKSNL LARFARDEFY PNSKSTIGVE FQTQKMDING KEIKAQIWDT AGQERFRAVT SAYYRGAVGA LLVYDISRRQ
101: TFHSIGRWLN ELHTHSDMNV VTILVGNKSD LKDLREVSTA EGKALAEAQG LFFMETSALD SSNVAAAFET VVKEIYNILS RKVMSSQELN KQDPASLSNG
201: KKVVIPSDGQ GEFKKGGCCS S

Arabidopsis Description

RABA5ARas-related protein RABA5a [Source:UniProtKB/Swiss-Prot;Acc:Q9FGK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.