Factsheet for TraesCS2B01G178600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G027660.2	Barley	cytosol	90.64	95.52
TraesCS2A01G153500.1	Wheat	cytosol	90.21	95.07
TraesCS2D01G158800.1	Wheat	cytosol	89.79	94.62
EER97606	Sorghum	cytosol	85.11	90.09
Zm00001d022251_P002	Maize	cytosol	84.26	89.19
Os07t0634200-01	Rice	plasma membrane	82.55	88.18
GSMUA_Achr6P00700_001	Banana	cytosol	76.17	81.36
GSMUA_Achr2P15860_001	Banana	cytosol	77.02	80.8
GSMUA_Achr5P06170_001	Banana	cytosol	56.17	78.11
AT5G47520.1	Thale cress	cytosol	72.77	77.38
CDY25963	Canola	cytosol	71.91	77.17
Bra017482.1-P	Field mustard	cytosol	71.91	76.13
CDY41053	Canola	cytosol	71.91	76.13
CDY40561	Canola	cytosol	71.49	76.02
Bra022136.1-P	Field mustard	cytosol	71.49	76.02
CDY17729	Canola	cytosol	71.49	76.02
CDX77774	Canola	cytosol	71.06	75.57
CDY28925	Canola	cytosol	71.06	75.57
KRH34233	Soybean	cytosol	71.49	75.34
Bra024937.1-P	Field mustard	cytosol	71.06	75.23
KRG92561	Soybean	cytosol	71.06	73.89
PGSC0003DMT400034567	Potato	cytosol	70.64	73.78
PGSC0003DMT400021794	Potato	cytosol	70.21	73.01
Solyc05g054150.2.1	Tomato	cytosol	69.79	72.57
TraesCS7B01G152600.1	Wheat	cytosol	57.02	61.75
Solyc11g012460.1.1	Tomato	plastid	72.34	61.59

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005774	GO:GO:0005886	GO:GO:0016020	GO:GO:0016787	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF430	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS2B01G178600	EnsemblPlants:TraesCS2B01G178600.1	TIGR:cd01868	SEG:seg	:

Description

No Description!

Coordinates

chr2B:-:153673500..153674815

Molecular Weight (calculated)

25929.7 Da

IEP (calculated)

8.426

GRAVY (calculated)

-0.351

Length

235 amino acids

Sequence
(BLAST)

001: MAYGGDEQQS QDYLFKIVLL GDSSVGKSNL LARFARNEFF PKSKSTIGVE FQTQKLVIDG KEIKAQIWDT AGQERFRAVT SAYYRGAVGA LLVYDITRRQ
101: TFDSVGRWLN ELHAHSDMNV VTILIGNKTD LKHAREVSTA EGKALAEAQG LFFMETSALD SSNVTAAFQT IVKEIYSILS RKVFQSQEQK KSELQSLSNG
201: KAVVLQNDAP SDTSGGGRGP GLDDHERVPV ACRRM

Best Arabidopsis Sequence Match ( AT5G47520.1 )
(BLAST)

001: MAFYSEDDKS EDYLFKIVLI GDSAVGKSNL LARFARDEFY PNSKSTIGVE FQTQKMDING KEIKAQIWDT AGQERFRAVT SAYYRGAVGA LLVYDISRRQ
101: TFHSIGRWLN ELHTHSDMNV VTILVGNKSD LKDLREVSTA EGKALAEAQG LFFMETSALD SSNVAAAFET VVKEIYNILS RKVMSSQELN KQDPASLSNG
201: KKVVIPSDGQ GEFKKGGCCS S

Arabidopsis Description

RABA5ARas-related protein RABA5a [Source:UniProtKB/Swiss-Prot;Acc:Q9FGK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.