CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01822	Soybean	cytosol	97.72	97.72
KRH55234	Soybean	cytosol	31.51	88.46
PGSC0003DMT400031071	Potato	cytosol	85.84	86.64
Solyc09g098170.2.1	Tomato	plastid	84.93	85.71
KRH46603	Soybean	cytosol	79.91	82.16
KRH34233	Soybean	cytosol	64.38	63.23
KRG92561	Soybean	cytosol	64.38	62.39
KRH48616	Soybean	cytosol	19.63	58.11
KRG93819	Soybean	cytosol	21.92	50.53
KRH39102	Soybean	cytosol	41.1	50.0
KRH41826	Soybean	cytosol	49.77	50.0
KRH60507	Soybean	cytosol	48.4	48.85
KRH48618	Soybean	cytosol	28.77	44.06

Protein Annotations

EntrezGene:100801618	MapMan:22.8.1.1	Gene3D:3.40.50.300	EMBL:ACUP02005362	ProteinID:CAA54506.1	EnsemblPlantsGene:GLYMA_08G361000
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0016787	EnsemblPlants:KRH46865	ProteinID:KRH46865	ProteinID:KRH46865.1	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF884	UniProt:Q39860	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI00000A7E1C	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:47267253..47269060

Molecular Weight (calculated)

24431.9 Da

IEP (calculated)

4.986

GRAVY (calculated)

-0.263

Length

219 amino acids

Sequence
(BLAST)

001: MSGSEDEGGE EYLFKIVIIG DSAVGKSNLL SRYARNEFNM HSKATIGVEF QTQCLEIDSK EVKAQIWDTA GQERFRAVTS AYYRGAVGAL IVYDISRRTT
101: FDSVGRWLDE LKTHCDTTVA MMLVGNKCDL ENIRAVSIDE GKSLAEAEGL FFMETSALDS TNVKMAFEMV IREIYNNVSR KVLNSETYKA ELSVNRVSLV
201: NNGAATSKQN QTYFSCCSR

Best Arabidopsis Sequence Match ( AT2G31680.1 )
(BLAST)

001: MSSDDEGGEE YLFKIVIIGD SAVGKSNLLS RYARNEFNAH SKATIGVEFQ TQNMEIEGKE VKAQIWDTAG QERFRAVTSA YYRGAVGALV VYDISRRSTF
101: ESVGRWLDEL KTHSDTTVAR MLVGNKCDLE SIRAVSVEEG KALAETEGLF FMETSALDST NVKTAFEMVI RDIYTNISRK QLNSDTYKTE LSMKNRVSLV
201: KDDNKSSTQG FGFSCCSSS

Arabidopsis Description

RABA5DRas-related protein RABA5d [Source:UniProtKB/Swiss-Prot;Acc:Q9SIP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.