CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77774
CDY17729
CDY25963
CDY28925
CDY40561
CDY41053

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06540.1	CDX77774	AT5G47520.1	21798944
AT3G06540.1	CDY17729	AT5G47520.1	21798944
AT3G06540.1	CDY25963	AT5G47520.1	21798944
AT3G06540.1	CDY28925	AT5G47520.1	21798944
AT3G06540.1	CDY40561	AT5G47520.1	21798944
AT3G06540.1	CDY41053	AT5G47520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029586.1-P	Field mustard	peroxisome	95.41	95.24
CDY05274	Canola	plastid	90.81	91.62
AT3G06540.1	Thale cress	cytosol	77.21	77.62
CDY34947	Canola	cytosol, plastid, vacuole	71.55	73.91
Zm00001d004622_P001	Maize	cytosol	6.89	54.17
VIT_04s0044g00070.t01	Wine grape	peroxisome	52.3	53.24
Zm00001d050984_P001	Maize	cytosol, mitochondrion, peroxisome	6.71	52.78
KRH28917	Soybean	cytosol, peroxisome, plastid	51.06	52.45
KRH76543	Soybean	cytosol, peroxisome, plasma membrane	50.53	51.72
CDY23584	Canola	cytosol, nucleus, peroxisome	13.6	50.33
Solyc02g082730.2.1	Tomato	extracellular	47.88	49.09
PGSC0003DMT400003853	Potato	peroxisome	47.53	48.64
Os01t0269100-01	Rice	plasma membrane	27.39	47.99
KRH05675	Soybean	extracellular, vacuole	16.08	45.73
KXG32246	Sorghum	cytosol, nucleus, peroxisome	43.46	44.01
GSMUA_Achr6P03390_001	Banana	peroxisome	37.81	43.5
HORVU3Hr1G038200.3	Barley	cytosol, nucleus, peroxisome	42.93	43.32
Zm00001d040408_P003	Maize	peroxisome	42.4	43.24
Zm00001d008269_P001	Maize	peroxisome	42.4	43.09
TraesCS3A01G185700.1	Wheat	cytosol	42.05	42.5
TraesCS3B01G215300.1	Wheat	cytosol, nucleus, peroxisome	41.87	42.32
TraesCS3D01G189700.1	Wheat	cytosol, nucleus, peroxisome	41.7	42.14
Zm00001d009201_P001	Maize	cytosol	11.84	39.65
CDY56553	Canola	cytosol	20.32	25.84
CDY21587	Canola	cytosol	20.32	25.84
CDX81131	Canola	cytosol	20.32	25.84
CDX71860	Canola	cytosol	18.55	25.67
CDX67817	Canola	cytosol	19.96	25.45
CDY45775	Canola	cytosol	19.96	25.45
CDY17885	Canola	cytosol	19.96	25.45
CDY05962	Canola	cytosol	19.96	25.45
CDX79782	Canola	cytosol	19.96	25.45
CDX98399	Canola	cytosol	19.96	25.45
CDX89038	Canola	cytosol	19.96	25.45
CDY65664	Canola	cytosol	17.49	24.15
CDX69899	Canola	cytosol	13.07	23.49
CDY44805	Canola	cytosol	19.96	17.96
CDY42416	Canola	endoplasmic reticulum, extracellular	2.83	13.45
CDY05966	Canola	cytosol	7.42	10.34
CDX71865	Canola	cytosol, mitochondrion	5.3	9.46

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.1.3	Gene3D:3.30.519.10	Gene3D:3.50.50.60	GO:A0A078GHA6	UniProt:A0A078GHA6
EnsemblPlants:CDY24684	ProteinID:CDY24684	ProteinID:CDY24684.1	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor	GO:GO:0003674
GO:GO:0005092	GO:GO:0005096	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005968	GO:GO:0006464	GO:GO:0006810	GO:GO:0006886
GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0017137	GO:GO:0018344	GO:GO:0019538	GO:GO:0030234	GO:GO:0043547	GO:GO:0050790
EnsemblPlantsGene:GSBRNA2T00027065001	InterPro:IPR036188	PFAM:PF00996	PIRSF:PIRSF016550	PRINTS:PR00891	PANTHER:PTHR11787
PANTHER:PTHR11787:SF23	InterPro:Rab_escort	SUPFAM:SSF51905	SUPFAM:SSF54373	UniParc:UPI0004EE8EB6	SEG:seg

Description

BnaA05g30830DBnaA05g30830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GHA6]

Coordinates

chrLK032162:+:358520..361317

Molecular Weight (calculated)

60830.6 Da

IEP (calculated)

4.415

GRAVY (calculated)

-0.002

Length

566 amino acids

Sequence
(BLAST)

001: MSDLPPYPPL DPTTYDLIIV GTGVSESILS AAASSSGTSV LHLDPNPFYG SHSASLSLPD LTSFLHSNSL SPPPPPPSDT PDFLSVDLAT RSLYSSVEIA
101: TFDSSILDER HSRKFNVDLC GPRVLFCADE SINLMLKSGS NNYVEFKSVD ASFVGDSSGE LRSVPDSRAA IFKDKSLGLM EKKQLMKFFK LVQAHLAAAA
201: ASSTESDEGA VKIAEEDMES PFVDFLAKMP LPPKIKSIIL YGIAMVDYDQ DNVEACGDLL KTREGIARLA LYITSIGRFS NALGALIYPI YGQGELPQAF
301: CRRAAVKGCI YVLRMPITAL LLDKASELIE TGGYKGVRLA TGQEIFSQKL ILDPCITVGS ESMSSLTDQQ KETLRVLVPK SISSEGKIAR GICIIRGSVK
401: ADISNALVVY PPKSLFPEQL AAIRVLQLGS GLAVCPADMH VLYFSTVCEN DDQGKAALLS AMSTLIKPQV PENLQSDSAV ENDTAEAAKP VVLWRALYVQ
501: AMVKGEFGGS ISSAASPDGN LSYNELVESA VKLYEQLMGS EELFKEETSP DNTTEEENDG GVEIEA

Best Arabidopsis Sequence Match ( AT3G06540.1 )
(BLAST)

001: MIDIPPYPPL DPSNYDLIVV GTGVSESVLA AAASSSGSSV LHLDPNPFYG SHFASLSLPD LTSFLHSNSV SPPPSPSSPP LPPSNNHDFI SVDLVNRSLY
101: SSVEISSFES EILEEHSRRF NVDLAGPRVV FCADESINLM LKSGANNYVE FKSIDASFVG DSSGELRNVP DSRAAIFKDK SLTLLEKNQL MKFFKLVQSH
201: LASSTEKDDS TTVKISEEDM ESPFVDFLSK MRLPPKIKSI ILYAIAMLDY DQDNTETCRH LLKTKEGIDR LALYITSMGR FSNALGALIY PIYGQGELPQ
301: AFCRRAAVKG CIYVLRMPIT ALLLDKETGG YKGVRLASGQ EIFSQKLILD PCVTVGLESL SSLTDQQNET LSVLVPKSMI NKEKIARGVC VIRGSVKANV
401: SNALVVYPPK SLFPEQLTAI RVLQLGSGLA VCPADMHVLY LSTLCDNDDQ GIKALLSAMS NLISLPVPEN RQSDSVVEND TSETKPILLW RALYVQELVK
501: GEFGGTISSM PSPDGNLNYN EIVESAVKLY EKLMGSEELF KEETSPAENT TEEENDGGVE IED

Arabidopsis Description

REPRab escort protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LLD4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.