Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007490.1-P | Field mustard | cytosol | 93.1 | 93.1 |
| CDX71865 | Canola | cytosol, mitochondrion | 46.55 | 59.62 |
| CDY42416 | Canola | endoplasmic reticulum, extracellular | 17.24 | 58.82 |
| CDX69899 | Canola | cytosol | 27.59 | 35.56 |
| CDX67817 | Canola | cytosol | 36.7 | 33.56 |
| CDX89038 | Canola | cytosol | 36.7 | 33.56 |
| CDX98399 | Canola | cytosol | 36.7 | 33.56 |
| CDY05962 | Canola | cytosol | 36.45 | 33.33 |
| CDY45775 | Canola | cytosol | 36.45 | 33.33 |
| CDY17885 | Canola | cytosol | 35.47 | 32.43 |
| CDX79782 | Canola | cytosol | 35.47 | 32.43 |
| CDX71860 | Canola | cytosol | 31.77 | 31.54 |
| CDY56553 | Canola | cytosol | 30.3 | 27.64 |
| CDX81131 | Canola | cytosol | 30.05 | 27.42 |
| CDY65664 | Canola | cytosol | 27.59 | 27.32 |
| CDY21587 | Canola | cytosol | 29.8 | 27.19 |
| CDY44805 | Canola | cytosol | 31.28 | 20.19 |
| CDY23584 | Canola | cytosol, nucleus, peroxisome | 4.19 | 11.11 |
| CDY34947 | Canola | cytosol, plastid, vacuole | 10.34 | 7.66 |
| CDY24684 | Canola | cytosol | 10.34 | 7.42 |
| CDY05274 | Canola | plastid | 9.85 | 7.13 |
Protein Annotations
| MapMan:22.8.4.2 | Gene3D:3.30.519.10 | GO:A0A078EXR7 | EnsemblPlants:CDY05966 | ProteinID:CDY05966 | ProteinID:CDY05966.1 |
| InterPro:FAD/NAD-bd_sf | InterPro:GDP_dissociation_inhibitor | GO:GO:0003674 | GO:GO:0005092 | GO:GO:0005093 | GO:GO:0006810 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007264 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015031 |
| GO:GO:0030234 | EnsemblPlantsGene:GSBRNA2T00121800001 | InterPro:IPR036188 | PFAM:PF00996 | PRINTS:PR00892 | PANTHER:PTHR11787 |
| PANTHER:PTHR11787:SF11 | InterPro:RabGDI | SUPFAM:SSF51905 | SUPFAM:SSF54373 | UniParc:UPI0004EEBF80 | : |
Description
BnaA09g38140D
Coordinates
chrLK031967:-:15879..18128
Molecular Weight (calculated)
45781.2 Da
IEP (calculated)
5.176
GRAVY (calculated)
-0.330
Length
406 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDQEINEIS GKIVRSTVQG KRCGIPHVFP SDLCSNPWEL EGFVFNRELE LDETRRSWVF FCENNPEDFG TVWKLVGGSK EISPGIYCQK YILTPDYASP
101: GGRFLLSKVT GWRFSLALYW MTFLAAEPKV ESEEDGKVTV VTSEGETSKR KLIDCDPSSQ LPNKATKIGR VDGAMENPNT NVSHSVHVLA HKSDMYVFCL
201: YSHNVAAKGK FIAFVSTDAE TENPQTELKA GIDLLCPVDE IFFYLYDRYE PVNEPTSDNC FISASYDATA HFETTVADVL NMYTLITGED YNEKDSKTHS
301: GMVDNTIAIM SHPIPNTNDP RSVHVIISQK QLAHKSDILK MKAILMLVVN PSLDHNFIAK TDNYFAMFRK YNDVCLLLFI LPRRGPPRES SSHLFLNDAE
401: TDNPQP
101: GGRFLLSKVT GWRFSLALYW MTFLAAEPKV ESEEDGKVTV VTSEGETSKR KLIDCDPSSQ LPNKATKIGR VDGAMENPNT NVSHSVHVLA HKSDMYVFCL
201: YSHNVAAKGK FIAFVSTDAE TENPQTELKA GIDLLCPVDE IFFYLYDRYE PVNEPTSDNC FISASYDATA HFETTVADVL NMYTLITGED YNEKDSKTHS
301: GMVDNTIAIM SHPIPNTNDP RSVHVIISQK QLAHKSDILK MKAILMLVVN PSLDHNFIAK TDNYFAMFRK YNDVCLLLFI LPRRGPPRES SSHLFLNDAE
401: TDNPQP
1: MEHMRHLLRH QTLQKTLMEH MRHVLQHQTL QKWKLCLMHT LFECFESEKS SIEAPYIACL SQRVFPEYGS PRRQTSLLLI EDEQDDNDTP YD
Arabidopsis Description
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.