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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:
  • plastid 1
  • mitochondrion 2
  • peroxisome 1
  • nucleus 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, peroxisome
Any Predictor:cytosol, nucleus, peroxisome, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY05274 Canola plastid 50.98 13.9
CDY24684 Canola cytosol 50.33 13.6
CDX69899 Canola cytosol 26.8 13.02
CDY34947 Canola cytosol, plastid, vacuole 41.83 11.68
CDX71860 Canola cytosol 28.76 10.76
CDY65664 Canola cytosol 28.1 10.49
CDX89038 Canola cytosol 28.76 9.91
CDX98399 Canola cytosol 28.76 9.91
CDY05962 Canola cytosol 28.76 9.91
CDY17885 Canola cytosol 28.76 9.91
CDX79782 Canola cytosol 28.76 9.91
CDY45775 Canola cytosol 28.76 9.91
CDX67817 Canola cytosol 28.76 9.91
CDX81131 Canola cytosol 28.76 9.89
CDY21587 Canola cytosol 28.76 9.89
CDY56553 Canola cytosol 28.76 9.89
CDY42416 Canola endoplasmic reticulum, extracellular 5.88 7.56
CDY44805 Canola cytosol 28.76 7.0
CDY05966 Canola cytosol 11.11 4.19
CDX71865 Canola cytosol, mitochondrion 7.84 3.79
Protein Annotations
Gene3D:3.50.50.60MapMan:35.1GO:A0A078GE52UniProt:A0A078GE52EnsemblPlants:CDY23584ProteinID:CDY23584
ProteinID:CDY23584.1InterPro:FAD/NAD-bd_sfInterPro:GDP_dissociation_inhibitorGO:GO:0003674GO:GO:0005092GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0007154GO:GO:0007165GO:GO:0007264GO:GO:0008150
GO:GO:0009987GO:GO:0030234GO:GO:0050790EnsemblPlantsGene:GSBRNA2T00023783001InterPro:IPR036188PFAM:PF00996
PANTHER:PTHR11787PANTHER:PTHR11787:SF23SUPFAM:SSF51905UniParc:UPI0004EE584F::
Description
BnaC05g40100DBnaC05g40100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GE52]
Coordinates
chrLK032145:-:182284..182872
Molecular Weight (calculated)
17069.0 Da
IEP (calculated)
8.973
GRAVY (calculated)
0.095
Length
153 amino acids
Sequence
(BLAST)
001: MIKTMWKSTQ DQRGDSSIGF VHYIYWQVIH SFQTHLGALI YPIYGQGELP QAFCCRSAVK GCIYVLRMPI TALLLDKASE SIFETGGYKG VRLASGQEIF
101: SQKLILDPCI TLGSESMSSL TDQQKETLRV FVPKTISSKG KIARGICIIR DVL
Best Arabidopsis Sequence Match ( AT3G06540.1 )
(BLAST)
001: MIDIPPYPPL DPSNYDLIVV GTGVSESVLA AAASSSGSSV LHLDPNPFYG SHFASLSLPD LTSFLHSNSV SPPPSPSSPP LPPSNNHDFI SVDLVNRSLY
101: SSVEISSFES EILEEHSRRF NVDLAGPRVV FCADESINLM LKSGANNYVE FKSIDASFVG DSSGELRNVP DSRAAIFKDK SLTLLEKNQL MKFFKLVQSH
201: LASSTEKDDS TTVKISEEDM ESPFVDFLSK MRLPPKIKSI ILYAIAMLDY DQDNTETCRH LLKTKEGIDR LALYITSMGR FSNALGALIY PIYGQGELPQ
301: AFCRRAAVKG CIYVLRMPIT ALLLDKETGG YKGVRLASGQ EIFSQKLILD PCVTVGLESL SSLTDQQNET LSVLVPKSMI NKEKIARGVC VIRGSVKANV
401: SNALVVYPPK SLFPEQLTAI RVLQLGSGLA VCPADMHVLY LSTLCDNDDQ GIKALLSAMS NLISLPVPEN RQSDSVVEND TSETKPILLW RALYVQELVK
501: GEFGGTISSM PSPDGNLNYN EIVESAVKLY EKLMGSEELF KEETSPAENT TEEENDGGVE IED
Arabidopsis Description
REPRab escort protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LLD4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.