CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX84035
CDX96860
CDY03088
CDY17621
CDY49093
CDY62016

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59920.1	CDX84035	AT1G14340.1	21798944
AT3G59920.1	CDX96860	AT1G14340.1	21798944
AT3G59920.1	CDY49093	AT1G14340.1	21798944
AT3G59920.1	CDY62016	AT1G14340.1	21798944
AT3G59920.1	CDY03088	AT2G01950.1	19000166
AT3G59920.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007493.1-P	Field mustard	cytosol	98.42	98.2
CDX71860	Canola	cytosol	88.06	95.6
CDX67817	Canola	cytosol	95.27	95.27
CDX98399	Canola	cytosol	95.27	95.27
CDX89038	Canola	cytosol	94.82	94.82
CDY45775	Canola	cytosol	94.37	94.37
AT3G59920.1	Thale cress	cytosol	93.24	93.24
CDX79782	Canola	cytosol	89.86	89.86
CDY17885	Canola	cytosol	89.86	89.86
HORVU1Hr1G064490.8	Barley	cytosol	84.23	83.67
Os05t0418000-01	Rice	cytosol, extracellular, plasma membrane, plastid	83.78	83.6
KRH59137	Soybean	endoplasmic reticulum	83.56	83.56
Os05t0304400-01	Rice	plasma membrane	83.56	83.37
TraesCS1D01G260900.1	Wheat	cytosol, golgi	83.56	83.37
TraesCS1B01G271700.1	Wheat	cytosol	83.56	83.37
TraesCS1A01G260900.1	Wheat	cytosol	83.56	83.37
KRH43030	Soybean	cytosol, endoplasmic reticulum, nucleus	83.33	83.33
GSMUA_Achr7P23620_001	Banana	cytosol	82.43	82.81
KXG22017	Sorghum	cytosol	82.66	82.47
EES18242	Sorghum	cytosol	82.66	82.47
Solyc12g017570.1.1	Tomato	plastid	82.43	82.43
TraesCS1B01G271800.2	Wheat	cytosol, golgi	82.66	82.29
TraesCS1A01G261000.1	Wheat	cytosol	82.66	82.29
VIT_05s0094g01550.t01	Wine grape	cytosol	81.53	81.53
PGSC0003DMT400035649	Potato	cytosol	80.86	80.86
GSMUA_Achr6P18380_001	Banana	cytosol	81.31	80.76
Solyc08g015860.2.1	Tomato	extracellular	80.41	80.41
Zm00001d010255_P001	Maize	cytosol, extracellular	82.21	80.4
TraesCS5B01G042400.1	Wheat	cytosol	79.95	79.78
TraesCS5A01G041100.1	Wheat	cytosol	79.5	79.33
Zm00001d007315_P001	Maize	cytosol	31.76	79.21
EER98346	Sorghum	cytosol	79.28	78.92
Os07t0271000-01	Rice	plasma membrane	79.28	78.92
TraesCS5D01G048100.1	Wheat	cytosol	79.05	78.88
Zm00001d010251_P003	Maize	cytosol	81.98	77.78
HORVU1Hr1G064480.1	Barley	cytosol	77.25	76.91
CDX81131	Canola	cytosol	76.35	76.18
CDY56553	Canola	cytosol	76.13	75.96
CDY21587	Canola	cytosol	75.68	75.51
CDX69899	Canola	cytosol	53.15	74.92
GSMUA_Achr10P...	Banana	cytosol	73.87	73.87
Zm00001d005498_P001	Maize	cytosol	80.18	72.06
Zm00001d038200_P002	Maize	plastid	81.53	71.26
TraesCS1D01G261000.1	Wheat	golgi	82.88	70.5
CDY65664	Canola	cytosol	61.71	66.83
HORVU5Hr1G009840.1	Barley	cytosol	79.5	64.65
Zm00001d009786_P001	Maize	plastid	45.72	59.18
CDY42416	Canola	endoplasmic reticulum, extracellular	15.77	58.82
Zm00001d011867_P001	Maize	cytosol	46.85	56.83
CDY44805	Canola	cytosol	74.77	52.78
Zm00001d016318_P002	Maize	cytosol	32.66	51.24
HORVU2Hr1G104740.2	Barley	mitochondrion	10.81	51.06
HORVU7Hr1G075170.1	Barley	mitochondrion	12.16	49.09
CDX71865	Canola	cytosol, mitochondrion	26.13	36.59
CDY05966	Canola	cytosol	33.33	36.45
CDY23584	Canola	cytosol, nucleus, peroxisome	9.91	28.76
CDY24684	Canola	cytosol	25.45	19.96
CDY34947	Canola	cytosol, plastid, vacuole	24.1	19.53
CDY05274	Canola	plastid	24.1	19.07

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.2	Gene3D:3.30.519.10	Gene3D:3.50.50.60	GO:A0A078EY78	EnsemblPlants:CDY05962
ProteinID:CDY05962	ProteinID:CDY05962.1	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor	GO:GO:0003674	GO:GO:0005092
GO:GO:0005093	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0009987	GO:GO:0015031	GO:GO:0030234	EnsemblPlantsGene:GSBRNA2T00121796001	InterPro:IPR036188	PFAM:PF00996
PRINTS:PR00891	PRINTS:PR00892	PANTHER:PTHR11787	PANTHER:PTHR11787:SF11	InterPro:RabGDI	SUPFAM:SSF51905
SUPFAM:SSF54373	UniParc:UPI0004EEAB59	SEG:seg	:	:	:

Description

BnaA09g38180D

Coordinates

chrLK031967:-:1171..3787

Molecular Weight (calculated)

49544.2 Da

IEP (calculated)

5.618

GRAVY (calculated)

-0.289

Length

444 amino acids

Sequence
(BLAST)

001: MDEQYEVIVL GTGLKECILS GLLSVDGVKV LHMDRNDYYG GESTSLYLNQ LWKKFRGEEK APEHLGASRD YNVDMMPKFM MGNGKLVRTL IHTDVTKYLS
101: FKAVDGSYVF VKGKVQKVPV TPMEAVKSNL MGIFEKRRAG KFFGYVQDYD EKEPKTHNGM DLTKLTTKEM ITKFGLDDNT IDFIGHAIAL HTNDQHLHQP
201: ALDTVMRMKL YAESLARFQG SSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPDCTVEF DEEGKVTGVT SEGETAKCKK VVCDPSYLPN KVNKIGRVAR
301: AIAIMSHPIP NTNDSHSVQV IIPQKQLARK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELKAG IDLLGPVDEI FFDMYDRYEP VNEPASDNCF
401: ISTSYDATTH FETTVADVLN MYTLITGKQL DLSVDLSAAS AAEE

Best Arabidopsis Sequence Match ( AT3G59920.1 )
(BLAST)

001: MDEEYEVIVL GTGLKECILS GLLSVDGVKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APEHLGASRD YNVDMMPKFM MGNGKLVRTL IHTDVTKYLS
101: FKAVDGSYVF VKGKVQKVPA TPMEALKSSL MGIFEKRRAG KFFSFVQEYD EKDPKTHDGM DLTRVTTKEL IAKYGLDGNT IDFIGHAVAL HTNDQHLDQP
201: AFDTVMRMKL YAESLARFQG TSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEGGKVIGVT SEGETAKCKK IVCDPSYLPN KVRKIGRVAR
301: AIAIMSHPIP NTNDSHSVQV IIPQKQLARK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELKPG TDLLGPVDEI FFDMYDRYEP VNEPELDNCF
401: ISTSYDATTH FETTVADVLN MYTLITGKQL DLSVDLSAAS AAEE

Arabidopsis Description

GDI2Guanosine nucleotide diphosphate dissociation inhibitor [Source:UniProtKB/TrEMBL;Acc:A0A178VFJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.