Factsheet for TraesCS5B01G042400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G521600.1
TraesCS2B01G551100.1
TraesCS2D01G523400.1
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59920.1	TraesCS2A01G521600.1	AT1G14340.1	21798944
AT3G59920.1	TraesCS2B01G551100.1	AT1G14340.1	21798944
AT3G59920.1	TraesCS2D01G523400.1	AT1G14340.1	21798944
AT3G59920.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT3G59920.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT3G59920.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G041100.1	Wheat	cytosol	99.1	99.1
TraesCS5D01G048100.1	Wheat	cytosol	98.88	98.88
Os07t0271000-01	Rice	plasma membrane	92.81	92.6
EER98346	Sorghum	cytosol	92.58	92.38
GSMUA_Achr7P23620_001	Banana	cytosol	84.27	84.84
Zm00001d005498_P001	Maize	cytosol	93.48	84.21
TraesCS1B01G271700.1	Wheat	cytosol	83.6	83.6
PGSC0003DMT400035649	Potato	cytosol	82.47	82.66
TraesCS1B01G271800.2	Wheat	cytosol, golgi	82.7	82.51
KRH59137	Soybean	endoplasmic reticulum	82.25	82.43
Solyc08g015860.2.1	Tomato	extracellular	82.02	82.21
KRH43030	Soybean	cytosol, endoplasmic reticulum, nucleus	82.02	82.21
VIT_05s0094g01550.t01	Wine grape	cytosol	81.8	81.98
Solyc12g017570.1.1	Tomato	plastid	81.57	81.76
GSMUA_Achr6P18380_001	Banana	cytosol	82.02	81.66
CDX98399	Canola	cytosol	80.9	81.08
CDX67817	Canola	cytosol	80.9	81.08
Bra003395.1-P	Field mustard	cytosol	80.67	80.86
CDY17885	Canola	cytosol	80.0	80.18
CDX79782	Canola	cytosol	80.0	80.18
Bra004805.1-P	Field mustard	cytosol	80.0	80.18
AT3G59920.1	Thale cress	cytosol	79.78	79.95
CDY05962	Canola	cytosol	79.78	79.95
CDX89038	Canola	cytosol	79.78	79.95
Bra014523.1-P	Field mustard	cytosol	79.78	79.95
HORVU5Hr1G009840.1	Barley	cytosol	97.98	79.85
Bra007493.1-P	Field mustard	cytosol	79.78	79.78
CDY45775	Canola	cytosol	79.55	79.73
AT2G44100.1	Thale cress	cytosol	79.55	79.55
CDX71860	Canola	cytosol	72.13	78.48
TraesCS4B01G205900.1	Wheat	cytosol, golgi	78.43	78.08
GSMUA_Achr10P...	Banana	cytosol	76.18	76.35
TraesCS3B01G215300.1	Wheat	cytosol, nucleus, peroxisome	22.47	17.86

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.2	Gene3D:3.30.519.10	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor
GO:GO:0003674	GO:GO:0005092	GO:GO:0005093	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165
GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0030234	InterPro:IPR036188
PFAM:PF00996	PRINTS:PR00891	PRINTS:PR00892	PANTHER:PTHR11787	PANTHER:PTHR11787:SF11	InterPro:RabGDI
SUPFAM:SSF51905	SUPFAM:SSF54373	EnsemblPlantsGene:TraesCS5B01G042400	EnsemblPlants:TraesCS5B01G042400.1	:	:

Description

No Description!

Coordinates

chr5B:+:47108780..47118523

Molecular Weight (calculated)

49394.8 Da

IEP (calculated)

5.849

GRAVY (calculated)

-0.310

Length

445 amino acids

Sequence
(BLAST)

001: MDEEYDVIVL GTGLKECILS GLLSVDRLKV LHMDRNDYYG GDSTSLNLNQ LWKRFKGDET PPASIGASRD YNVDMVPKFM MANGALVRVL IHTGVTKYLS
101: FKAVDGSYVF NKGKIHKVPS TDMEALKSPL MGLFEKRRAG KFFLYVQDYK ENEPSTHKGL DLTKMTSKQL ISKYGLDDNT IDFIGHAVAL HKDDSYLSEP
201: AIDIVKRMKL YAESVARFQG GSPYIYPLYG LGELPQGFAR LSAVYGGTYM LNKPECKVEF DDEGKVRGVT SEGETAKGKK VVCDPSYVPE KVKKVGKVFR
301: AIAIMSHPIP NTAESHSVQI IIPQKQLGRR SDMYVFCCSY SHNVASKGKF IAFVSAQAES DNPEAELKPG IDLLGPVDEL FFDTYDRYEP TNDPSSDNCF
401: ISTSYDATTH FESTVMDVLS LYTKITGKTV DLSVDLSAAS ANEDD

Best Arabidopsis Sequence Match ( AT2G44100.1 )
(BLAST)

001: MDEEYEVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APAHLGSSRD YNVDMMPKFM MANGKLVRVL IHTDVTKYLS
101: FKAVDGSYVF VQGKVQKVPA TPMEALKSPL MGIFEKRRAG KFFSYVQEYD EKDPKTHDGM DLRRVTTKDL IAKFGLKEDT IDFIGHAVAL HCNDNHLHQP
201: AYDTVMRMKL YAESLARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEEGKVSGVT SEGETAKCKK VVCDPSYLTN KVRKIGRVAR
301: AIAIMSHPIP NTNDSQSVQV ILPQKQLGRK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELQPG IDLLGPVDEL FFDIYDRYEP VNEPTLDNCF
401: ISTSYDATTH FDTTVVDVLN MYKLITGKEL DLSVDLNAAS AAEEE

Arabidopsis Description

GDI1Guanosine nucleotide diphosphate dissociation inhibitor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.