CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES12950
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59920.1	EES12950	AT1G14340.1	21798944
AT3G59920.1	OQU92006	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G042400.1	Wheat	cytosol	92.38	92.58
TraesCS5A01G041100.1	Wheat	cytosol	92.15	92.36
TraesCS5D01G048100.1	Wheat	cytosol	91.93	92.13
Os07t0271000-01	Rice	plasma membrane	91.7	91.7
Zm00001d005498_P001	Maize	cytosol	96.64	87.25
GSMUA_Achr7P23620_001	Banana	cytosol	84.3	85.07
EES18242	Sorghum	cytosol	84.75	84.94
KXG22017	Sorghum	cytosol	84.53	84.72
PGSC0003DMT400035649	Potato	cytosol	82.96	83.33
Solyc08g015860.2.1	Tomato	extracellular	82.51	82.88
KRH59137	Soybean	endoplasmic reticulum	82.29	82.66
VIT_05s0094g01550.t01	Wine grape	cytosol	82.06	82.43
KRH43030	Soybean	cytosol, endoplasmic reticulum, nucleus	82.06	82.43
Solyc12g017570.1.1	Tomato	plastid	81.84	82.21
GSMUA_Achr6P18380_001	Banana	cytosol	82.06	81.88
CDX67817	Canola	cytosol	80.72	81.08
CDX98399	Canola	cytosol	80.72	81.08
Bra003395.1-P	Field mustard	cytosol	80.49	80.86
CDY17885	Canola	cytosol	80.49	80.86
Bra004805.1-P	Field mustard	cytosol	80.49	80.86
CDX79782	Canola	cytosol	80.49	80.86
CDX89038	Canola	cytosol	79.6	79.95
Bra014523.1-P	Field mustard	cytosol	79.6	79.95
AT3G59920.1	Thale cress	cytosol	79.37	79.73
CDY45775	Canola	cytosol	79.37	79.73
Bra007493.1-P	Field mustard	cytosol	79.37	79.55
AT2G44100.1	Thale cress	cytosol	79.37	79.55
CDY05962	Canola	cytosol	78.92	79.28
EER92083	Sorghum	cytosol	79.15	78.97
CDX71860	Canola	cytosol	71.52	78.0
HORVU5Hr1G009840.1	Barley	cytosol	93.05	76.01
GSMUA_Achr10P...	Banana	cytosol	75.56	75.9
KXG32246	Sorghum	cytosol, nucleus, peroxisome	24.44	19.5

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.2	Gene3D:3.30.519.10	Gene3D:3.50.50.60	EntrezGene:8084599	UniProt:C5X3H7
EnsemblPlants:EER98346	ProteinID:EER98346	ProteinID:EER98346.1	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor	GO:GO:0003674
GO:GO:0003824	GO:GO:0005092	GO:GO:0005093	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0015031	GO:GO:0016491	GO:GO:0030234	GO:GO:0050790	InterPro:IPR036188
PFAM:PF00996	PRINTS:PR00891	PRINTS:PR00892	PANTHER:PTHR11787	PANTHER:PTHR11787:SF11	InterPro:RabGDI
EnsemblPlantsGene:SORBI_3002G103800	SUPFAM:SSF51905	SUPFAM:SSF54373	UniParc:UPI0001A83F41	RefSeq:XP_002461825.1	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:12172184..12178882

Molecular Weight (calculated)

49592.2 Da

IEP (calculated)

6.441

GRAVY (calculated)

-0.291

Length

446 amino acids

Sequence
(BLAST)

001: MDVEYDVIVL GTGLKECILS GLLSVDRLKV LHMDRNDYYG GDSTSLNLNQ LWKRFKGEQT PPAHIGASRD YNVDMVPKFM MANGALVRVL IHTGVTKYMS
101: FKAVDGSYVF NKGKIHKVPS NDMEALKSPL MGLFEKRRAG KFFLYVQDYK EDDRSTHKGY DLTKLTTKEL ISKYGLDDNT IDFIGHAVAL HRDDSYLTEP
201: AIDTVKRMKL YAESVARFQG GSPYIYPLYG LGELPQGFAR LSAVYGGTYM LSKPECKVEF DSEGKVCGVT SEGETAKCKK VVCDPSYLPN KVKKVGKVFR
301: AIAIMSHPIP NTAESHSVQI ILPQKQLGRR SDMYVFCCSY SHNVASKGKY IAFVSAQAET DNPEKELKPG IDLLGTVDEL FIDTYDRYEP SNDSSADNCF
401: ISTSYDATTH FESTVMDVLS LYTKITGKTV DLSVDLSAAS AADDDL

Best Arabidopsis Sequence Match ( AT3G59920.1 )
(BLAST)

001: MDEEYEVIVL GTGLKECILS GLLSVDGVKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APEHLGASRD YNVDMMPKFM MGNGKLVRTL IHTDVTKYLS
101: FKAVDGSYVF VKGKVQKVPA TPMEALKSSL MGIFEKRRAG KFFSFVQEYD EKDPKTHDGM DLTRVTTKEL IAKYGLDGNT IDFIGHAVAL HTNDQHLDQP
201: AFDTVMRMKL YAESLARFQG TSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEGGKVIGVT SEGETAKCKK IVCDPSYLPN KVRKIGRVAR
301: AIAIMSHPIP NTNDSHSVQV IIPQKQLARK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELKPG TDLLGPVDEI FFDMYDRYEP VNEPELDNCF
401: ISTSYDATTH FETTVADVLN MYTLITGKQL DLSVDLSAAS AAEE

Arabidopsis Description

GDI2Guanosine nucleotide diphosphate dissociation inhibitor [Source:UniProtKB/TrEMBL;Acc:A0A178VFJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.