Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 6
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
plasma membrane: 28056797 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os04t0641400-02 | |
| Os10t0114400-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G59920.1 | Os04t0641400-02 | AT1G14340.1 | 21798944 |
| AT3G59920.1 | Os10t0114400-01 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G042400.1 | Wheat | cytosol | 92.6 | 92.81 |
| TraesCS5A01G041100.1 | Wheat | cytosol | 92.6 | 92.81 |
| TraesCS5D01G048100.1 | Wheat | cytosol | 92.38 | 92.58 |
| EER98346 | Sorghum | cytosol | 91.7 | 91.7 |
| GSMUA_Achr7P23620_001 | Banana | cytosol | 83.63 | 84.39 |
| Os05t0418000-01 | Rice | cytosol, extracellular, plasma membrane, plastid | 83.86 | 84.04 |
| Zm00001d005498_P001 | Maize | cytosol | 92.83 | 83.81 |
| Os05t0304400-01 | Rice | plasma membrane | 83.41 | 83.6 |
| VIT_05s0094g01550.t01 | Wine grape | cytosol | 82.51 | 82.88 |
| PGSC0003DMT400035649 | Potato | cytosol | 81.84 | 82.21 |
| KRH59137 | Soybean | endoplasmic reticulum | 81.84 | 82.21 |
| Solyc12g017570.1.1 | Tomato | plastid | 81.61 | 81.98 |
| KRH43030 | Soybean | cytosol, endoplasmic reticulum, nucleus | 81.61 | 81.98 |
| Solyc08g015860.2.1 | Tomato | extracellular | 81.39 | 81.76 |
| GSMUA_Achr6P18380_001 | Banana | cytosol | 81.61 | 81.43 |
| CDX67817 | Canola | cytosol | 80.72 | 81.08 |
| CDX98399 | Canola | cytosol | 80.72 | 81.08 |
| Bra003395.1-P | Field mustard | cytosol | 80.49 | 80.86 |
| AT3G59920.1 | Thale cress | cytosol | 80.04 | 80.41 |
| Bra004805.1-P | Field mustard | cytosol | 80.04 | 80.41 |
| CDY17885 | Canola | cytosol | 80.04 | 80.41 |
| CDX79782 | Canola | cytosol | 80.04 | 80.41 |
| CDX89038 | Canola | cytosol | 79.6 | 79.95 |
| Bra014523.1-P | Field mustard | cytosol | 79.6 | 79.95 |
| AT2G44100.1 | Thale cress | cytosol | 79.6 | 79.78 |
| CDY45775 | Canola | cytosol | 79.37 | 79.73 |
| Bra007493.1-P | Field mustard | cytosol | 79.37 | 79.55 |
| CDY05962 | Canola | cytosol | 78.92 | 79.28 |
| CDX71860 | Canola | cytosol | 71.52 | 78.0 |
| Os03t0277000-01 | Rice | plasma membrane | 77.35 | 77.18 |
| HORVU5Hr1G009840.1 | Barley | cytosol | 93.5 | 76.37 |
| GSMUA_Achr10P... | Banana | cytosol | 75.56 | 75.9 |
| Os01t0269100-01 | Rice | plasma membrane | 15.92 | 21.98 |
Protein Annotations
| Gene3D:1.10.405.10 | MapMan:22.8.4.2 | Gene3D:3.30.519.10 | Gene3D:3.50.50.60 | EntrezGene:4342895 | EMBL:AK069636 |
| ProteinID:BAC79568.1 | ProteinID:BAF21258.1 | ProteinID:BAT00939.1 | InterPro:FAD/NAD-bd_sf | InterPro:GDP_dissociation_inhibitor | GO:GO:0003674 |
| GO:GO:0005092 | GO:GO:0005093 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007264 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015031 |
| GO:GO:0030234 | GO:GO:0050790 | InterPro:IPR036188 | EnsemblPlantsGene:Os07g0271000 | EnsemblPlants:Os07t0271000-01 | PFAM:PF00996 |
| PRINTS:PR00891 | PRINTS:PR00892 | PANTHER:PTHR11787 | PANTHER:PTHR11787:SF11 | UniProt:Q8LIL4 | InterPro:RabGDI |
| SUPFAM:SSF51905 | SUPFAM:SSF54373 | UniParc:UPI00001B3955 | RefSeq:XP_015645084.1 | SEG:seg | : |
Description
Similar to GDP dissociation inhibitor protein OsGDI1. (Os07t0271000-01)
Coordinates
chr7:-:9982698..9988539
Molecular Weight (calculated)
49437.1 Da
IEP (calculated)
6.195
GRAVY (calculated)
-0.257
Length
446 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVEYDVIVL GTGLKECILS GLLSVDRLKV LHMDRNDYYG GDSTSLNLNQ LWKRFKGEGT PPAQIGASRD YNVDMIPKFM MANGTLVRVL IHTGVTKYLS
101: FKAVDGSYVF NKGKIHKVPS TDMEALKSPL MGLFEKRRAG KFFLFVQDYK ENDPSTHKGY DLNKMTTKEL ISKYGLDDNT IDFIGHAVAL HKEDNYLTEP
201: AIDTVKRMKL YAESVGRFQG GSPYIYPLYG LGELPQGFAR LSAVYGGTYM LNKPECKIEF NDEGKVCGVT SEGETAKCKK VVCDPSYIPD KVRKVGKVFR
301: AIAIMSHPIP NTADSHSVQI IIPQKQLGRK SDMYVFCCSY SHNVASKGKF IAFVSAQAES ENPAAELKPG IDLLGPVDEL FIDTYDRFEP TNDPSSDNCF
401: ISTSYDATTH FESTVMDVLS IYTKITGKTV DLSVDLSAAS AAEDDL
101: FKAVDGSYVF NKGKIHKVPS TDMEALKSPL MGLFEKRRAG KFFLFVQDYK ENDPSTHKGY DLNKMTTKEL ISKYGLDDNT IDFIGHAVAL HKEDNYLTEP
201: AIDTVKRMKL YAESVGRFQG GSPYIYPLYG LGELPQGFAR LSAVYGGTYM LNKPECKIEF NDEGKVCGVT SEGETAKCKK VVCDPSYIPD KVRKVGKVFR
301: AIAIMSHPIP NTADSHSVQI IIPQKQLGRK SDMYVFCCSY SHNVASKGKF IAFVSAQAES ENPAAELKPG IDLLGPVDEL FIDTYDRFEP TNDPSSDNCF
401: ISTSYDATTH FESTVMDVLS IYTKITGKTV DLSVDLSAAS AAEDDL
001: MDEEYEVIVL GTGLKECILS GLLSVDGVKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APEHLGASRD YNVDMMPKFM MGNGKLVRTL IHTDVTKYLS
101: FKAVDGSYVF VKGKVQKVPA TPMEALKSSL MGIFEKRRAG KFFSFVQEYD EKDPKTHDGM DLTRVTTKEL IAKYGLDGNT IDFIGHAVAL HTNDQHLDQP
201: AFDTVMRMKL YAESLARFQG TSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEGGKVIGVT SEGETAKCKK IVCDPSYLPN KVRKIGRVAR
301: AIAIMSHPIP NTNDSHSVQV IIPQKQLARK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELKPG TDLLGPVDEI FFDMYDRYEP VNEPELDNCF
401: ISTSYDATTH FETTVADVLN MYTLITGKQL DLSVDLSAAS AAEE
101: FKAVDGSYVF VKGKVQKVPA TPMEALKSSL MGIFEKRRAG KFFSFVQEYD EKDPKTHDGM DLTRVTTKEL IAKYGLDGNT IDFIGHAVAL HTNDQHLDQP
201: AFDTVMRMKL YAESLARFQG TSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEGGKVIGVT SEGETAKCKK IVCDPSYLPN KVRKIGRVAR
301: AIAIMSHPIP NTNDSHSVQV IIPQKQLARK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELKPG TDLLGPVDEI FFDMYDRYEP VNEPELDNCF
401: ISTSYDATTH FETTVADVLN MYTLITGKQL DLSVDLSAAS AAEE
Arabidopsis Description
GDI2Guanosine nucleotide diphosphate dissociation inhibitor [Source:UniProtKB/TrEMBL;Acc:A0A178VFJ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.