Factsheet for Solyc08g015860.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
cytosol 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 22364583
unclear: 26455813
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g008430.1.1
Solyc05g007200.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59920.1	Solyc05g007200.2.1	AT1G14340.1	21798944
AT3G59920.1	Solyc04g008430.1.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035649	Potato	cytosol	99.1	99.1
Solyc12g017570.1.1	Tomato	plastid	94.37	94.37
KRH43030	Soybean	cytosol, endoplasmic reticulum, nucleus	90.32	90.32
KRH59137	Soybean	endoplasmic reticulum	90.09	90.09
VIT_05s0094g01550.t01	Wine grape	cytosol	88.51	88.51
GSMUA_Achr7P23620_001	Banana	cytosol	87.84	88.24
GSMUA_Achr6P18380_001	Banana	cytosol	86.94	86.35
Os05t0418000-01	Rice	cytosol, extracellular, plasma membrane, plastid	86.49	86.29
Os05t0304400-01	Rice	plasma membrane	86.49	86.29
KXG22017	Sorghum	cytosol	86.26	86.07
EES18242	Sorghum	cytosol	86.04	85.84
HORVU1Hr1G064490.8	Barley	cytosol	86.26	85.68
TraesCS1A01G260900.1	Wheat	cytosol	85.59	85.39
TraesCS1D01G260900.1	Wheat	cytosol, golgi	85.14	84.94
TraesCS1B01G271700.1	Wheat	cytosol	85.14	84.94
TraesCS1A01G261000.1	Wheat	cytosol	85.14	84.75
TraesCS1B01G271800.2	Wheat	cytosol, golgi	84.68	84.3
Zm00001d010255_P001	Maize	cytosol, extracellular	85.81	83.92
CDX98399	Canola	cytosol	82.88	82.88
CDX67817	Canola	cytosol	82.88	82.88
CDY17885	Canola	cytosol	82.66	82.66
CDX79782	Canola	cytosol	82.66	82.66
Bra004805.1-P	Field mustard	cytosol	82.66	82.66
Bra003395.1-P	Field mustard	cytosol	82.66	82.66
EER98346	Sorghum	cytosol	82.88	82.51
CDY45775	Canola	cytosol	82.21	82.21
TraesCS5A01G041100.1	Wheat	cytosol	82.21	82.02
TraesCS5B01G042400.1	Wheat	cytosol	82.21	82.02
AT3G59920.1	Thale cress	cytosol	81.98	81.98
CDX89038	Canola	cytosol	81.98	81.98
Bra014523.1-P	Field mustard	cytosol	81.98	81.98
AT2G44100.1	Thale cress	cytosol	81.98	81.8
TraesCS5D01G048100.1	Wheat	cytosol	81.76	81.57
Zm00001d010251_P003	Maize	cytosol	85.81	81.41
Os07t0271000-01	Rice	plasma membrane	81.76	81.39
Solyc01g105810.2.1	Tomato	cytosol, unclear	81.08	80.9
Bra007493.1-P	Field mustard	cytosol	81.08	80.9
CDY05962	Canola	cytosol	80.41	80.41
GSMUA_Achr10P...	Banana	cytosol	79.95	79.95
CDX71860	Canola	cytosol	72.75	78.97
HORVU1Hr1G064480.1	Barley	cytosol	78.38	78.03
Zm00001d007315_P001	Maize	cytosol	31.08	77.53
Zm00001d005498_P001	Maize	cytosol	82.88	74.49
Zm00001d038200_P002	Maize	plastid	84.68	74.02
TraesCS1D01G261000.1	Wheat	golgi	84.91	72.22
HORVU5Hr1G009840.1	Barley	cytosol	82.43	67.03
Zm00001d009786_P001	Maize	plastid	45.72	59.18
Zm00001d011867_P001	Maize	cytosol	47.52	57.65
Zm00001d016318_P002	Maize	cytosol	33.33	52.3
HORVU2Hr1G104740.2	Barley	mitochondrion	10.59	50.0
HORVU7Hr1G075170.1	Barley	mitochondrion	12.16	49.09
Solyc02g082730.2.1	Tomato	extracellular	25.0	20.11

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.2	Gene3D:3.30.519.10	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor
GO:GO:0003674	GO:GO:0005092	GO:GO:0005093	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987
GO:GO:0015031	GO:GO:0030234	GO:GO:0050790	InterPro:IPR036188	UniProt:K4CJB4	PFAM:PF00996
PRINTS:PR00891	PRINTS:PR00892	PANTHER:PTHR11787	PANTHER:PTHR11787:SF10	InterPro:RabGDI	SUPFAM:SSF51905
SUPFAM:SSF54373	EnsemblPlantsGene:Solyc08g015860.2	EnsemblPlants:Solyc08g015860.2.1	UniParc:UPI000276B4B8	:	:

Description

Guanosine nucleotide diphosphate dissociation inhibitor [Source:UniProtKB/TrEMBL;Acc:K4CJB4]

Coordinates

chr8:+:6167425..6173736

Molecular Weight (calculated)

49523.2 Da

IEP (calculated)

5.677

GRAVY (calculated)

-0.275

Length

444 amino acids

Sequence
(BLAST)

001: MDEEYDVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESTSLNLVQ LWKRFKGSDK PPAELGSSRD YNVDMIPKFI MANGALVRVL IHTDVTKYLY
101: FKAVDGSFVY NKGKVHKVPA TDMEALKSPL MGIFEKRRAR KFFIYVQDYK ESDPKTHEGM DLTKVTTREL IAKYGLDDNT VDFIGHALAL HRDDRYLDEP
201: ALDTVKRMKL YAESLARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DAEGKVCGVT SEGETAKCKK VVCDPSYLPS KVRKVSKVAR
301: AIAIMSHPIP NTSESHSVQI ILPQKQLGRK SDMYLFCCSY THNVAPKGKF IAFVSTEAET DNPENELKPG VSLLGPVDEI VYETYDRSEP VNECTLDNCF
401: VSTSYDATTH FESTVDDVLN LYTKITGKVL DLNVDLSAAS AAEE

Best Arabidopsis Sequence Match ( AT3G59920.1 )
(BLAST)

001: MDEEYEVIVL GTGLKECILS GLLSVDGVKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APEHLGASRD YNVDMMPKFM MGNGKLVRTL IHTDVTKYLS
101: FKAVDGSYVF VKGKVQKVPA TPMEALKSSL MGIFEKRRAG KFFSFVQEYD EKDPKTHDGM DLTRVTTKEL IAKYGLDGNT IDFIGHAVAL HTNDQHLDQP
201: AFDTVMRMKL YAESLARFQG TSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEGGKVIGVT SEGETAKCKK IVCDPSYLPN KVRKIGRVAR
301: AIAIMSHPIP NTNDSHSVQV IIPQKQLARK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELKPG TDLLGPVDEI FFDMYDRYEP VNEPELDNCF
401: ISTSYDATTH FETTVADVLN MYTLITGKQL DLSVDLSAAS AAEE

Arabidopsis Description

GDI2Guanosine nucleotide diphosphate dissociation inhibitor [Source:UniProtKB/TrEMBL;Acc:A0A178VFJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.