Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr2P15100_001 | |
| GSMUA_Achr3P19960_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G59920.1 | GSMUA_Achr3P19960_001 | AT1G14340.1 | 21798944 |
| AT3G59920.1 | GSMUA_Achr2P15100_001 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P23620_001 | Banana | cytosol | 93.51 | 94.57 |
| Solyc12g017570.1.1 | Tomato | plastid | 87.7 | 88.29 |
| KXG22017 | Sorghum | cytosol | 87.7 | 88.09 |
| VIT_05s0094g01550.t01 | Wine grape | cytosol | 87.47 | 88.06 |
| KRH59137 | Soybean | endoplasmic reticulum | 87.02 | 87.61 |
| KRH43030 | Soybean | cytosol, endoplasmic reticulum, nucleus | 86.8 | 87.39 |
| Os05t0418000-01 | Rice | cytosol, extracellular, plasma membrane, plastid | 86.8 | 87.19 |
| PGSC0003DMT400035649 | Potato | cytosol | 86.58 | 87.16 |
| Solyc08g015860.2.1 | Tomato | extracellular | 86.35 | 86.94 |
| TraesCS1A01G261000.1 | Wheat | cytosol | 86.58 | 86.77 |
| TraesCS1B01G271800.2 | Wheat | cytosol, golgi | 86.35 | 86.55 |
| EES18242 | Sorghum | cytosol | 86.13 | 86.52 |
| HORVU1Hr1G064490.8 | Barley | cytosol | 86.35 | 86.35 |
| TraesCS1D01G260900.1 | Wheat | cytosol, golgi | 85.91 | 86.29 |
| TraesCS1B01G271700.1 | Wheat | cytosol | 85.91 | 86.29 |
| Os05t0304400-01 | Rice | plasma membrane | 85.91 | 86.29 |
| GSMUA_Achr10P... | Banana | cytosol | 85.46 | 86.04 |
| TraesCS1A01G260900.1 | Wheat | cytosol | 85.46 | 85.84 |
| Zm00001d010255_P001 | Maize | cytosol, extracellular | 86.8 | 85.46 |
| CDX79782 | Canola | cytosol | 82.55 | 83.11 |
| Bra004805.1-P | Field mustard | cytosol | 82.55 | 83.11 |
| CDY17885 | Canola | cytosol | 82.55 | 83.11 |
| CDY45775 | Canola | cytosol | 82.33 | 82.88 |
| CDX98399 | Canola | cytosol | 82.33 | 82.88 |
| CDX67817 | Canola | cytosol | 82.33 | 82.88 |
| Bra003395.1-P | Field mustard | cytosol | 82.1 | 82.66 |
| Bra014523.1-P | Field mustard | cytosol | 82.1 | 82.66 |
| CDX89038 | Canola | cytosol | 82.1 | 82.66 |
| GSMUA_Achr9P03980_001 | Banana | cytosol | 81.88 | 82.06 |
| GSMUA_Achr10P... | Banana | cytosol | 81.88 | 82.06 |
| EER98346 | Sorghum | cytosol | 81.88 | 82.06 |
| TraesCS5A01G041100.1 | Wheat | cytosol | 81.66 | 82.02 |
| TraesCS5B01G042400.1 | Wheat | cytosol | 81.66 | 82.02 |
| AT2G44100.1 | Thale cress | cytosol | 81.66 | 82.02 |
| AT3G59920.1 | Thale cress | cytosol | 81.43 | 81.98 |
| Zm00001d010251_P003 | Maize | cytosol | 85.46 | 81.62 |
| Os07t0271000-01 | Rice | plasma membrane | 81.43 | 81.61 |
| TraesCS5D01G048100.1 | Wheat | cytosol | 81.21 | 81.57 |
| Bra007493.1-P | Field mustard | cytosol | 80.98 | 81.35 |
| CDY05962 | Canola | cytosol | 80.76 | 81.31 |
| GSMUA_Achr10P... | Banana | cytosol | 80.98 | 81.17 |
| GSMUA_Achr7P02930_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 20.81 | 80.87 |
| HORVU1Hr1G064480.1 | Barley | cytosol | 79.87 | 80.04 |
| CDX71860 | Canola | cytosol | 72.48 | 79.22 |
| Zm00001d007315_P001 | Maize | cytosol | 30.87 | 77.53 |
| Zm00001d005498_P001 | Maize | cytosol | 82.1 | 74.29 |
| TraesCS1D01G261000.1 | Wheat | golgi | 86.58 | 74.14 |
| Zm00001d038200_P002 | Maize | plastid | 84.12 | 74.02 |
| HORVU5Hr1G009840.1 | Barley | cytosol | 81.88 | 67.03 |
| GSMUA_Achr7P02920_001 | Banana | cytosol | 13.65 | 59.8 |
| Zm00001d009786_P001 | Maize | plastid | 45.19 | 58.89 |
| Zm00001d011867_P001 | Maize | cytosol | 46.76 | 57.1 |
| Zm00001d016318_P002 | Maize | cytosol | 31.77 | 50.18 |
| HORVU2Hr1G104740.2 | Barley | mitochondrion | 9.4 | 44.68 |
| HORVU7Hr1G075170.1 | Barley | mitochondrion | 10.96 | 44.55 |
| GSMUA_Achr6P03390_001 | Banana | peroxisome | 21.92 | 19.92 |
Protein Annotations
| Gene3D:1.10.405.10 | MapMan:22.8.4.2 | Gene3D:3.30.519.10 | Gene3D:3.50.50.60 | InterPro:FAD/NAD-bd_sf | InterPro:GDP_dissociation_inhibitor |
| GO:GO:0003674 | GO:GO:0005092 | GO:GO:0005093 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007264 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0015031 | GO:GO:0030234 | GO:GO:0050790 | EnsemblPlantsGene:GSMUA_Achr6G18380_001 | EnsemblPlants:GSMUA_Achr6P18380_001 | EnsemblPlants:GSMUA_Achr6T18380_001 |
| InterPro:IPR036188 | UniProt:M0T836 | PFAM:PF00996 | PRINTS:PR00891 | PRINTS:PR00892 | PANTHER:PTHR11787 |
| PANTHER:PTHR11787:SF11 | InterPro:RabGDI | SUPFAM:SSF51905 | UniParc:UPI000295D194 | SEG:seg | : |
Description
Rab GDP dissociation inhibitor alpha [Source:GMGC_GENE;Acc:GSMUA_Achr6G18380_001]
Coordinates
chr6:+:12653246..12662414
Molecular Weight (calculated)
50279.2 Da
IEP (calculated)
5.374
GRAVY (calculated)
-0.288
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEEYDVIVL GTGLKECILS GLLSVDGLKV LHMDRNEYYG GESFKVEKDS YYLLWKRFRG SDKPPAQLGP SRDYNVDMIP KFMMANGTLV RTLIHTDVTK
101: YLSFKAVDGS YVFNKGKIHK VPATDMEALK SPLMGLFEKR RARKFFIYVQ NYDESDPKTH EGLDLTRVTT KEFISKFGLD DNTVDFIGHA LALHRDDRYL
201: NEPALDTVKR IKLYEESLAR FQGGSPYIYP LYGLGELPQA FARLSAVYGG TYMLNKLECK VEFDMEGKAC GVTSEGETAR CKKVVCDPSY LPNKVRKVGK
301: VARAIAIMSH PIPNTDESHS AQVILPQKQL GRKSDMYLFC CSYSHNVAPK GKFIAFVSTE AETDRPEVEL KPGIDLLGPV DELFFETYDI YEPVNEPSLD
401: NCFISTSYDA TTHFESTVMD VLSMYTMITG KTLDLSVDLS AASAAEE
101: YLSFKAVDGS YVFNKGKIHK VPATDMEALK SPLMGLFEKR RARKFFIYVQ NYDESDPKTH EGLDLTRVTT KEFISKFGLD DNTVDFIGHA LALHRDDRYL
201: NEPALDTVKR IKLYEESLAR FQGGSPYIYP LYGLGELPQA FARLSAVYGG TYMLNKLECK VEFDMEGKAC GVTSEGETAR CKKVVCDPSY LPNKVRKVGK
301: VARAIAIMSH PIPNTDESHS AQVILPQKQL GRKSDMYLFC CSYSHNVAPK GKFIAFVSTE AETDRPEVEL KPGIDLLGPV DELFFETYDI YEPVNEPSLD
401: NCFISTSYDA TTHFESTVMD VLSMYTMITG KTLDLSVDLS AASAAEE
001: MDEEYEVIVL GTGLKECILS GLLSVDGVKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APEHLGASRD YNVDMMPKFM MGNGKLVRTL IHTDVTKYLS
101: FKAVDGSYVF VKGKVQKVPA TPMEALKSSL MGIFEKRRAG KFFSFVQEYD EKDPKTHDGM DLTRVTTKEL IAKYGLDGNT IDFIGHAVAL HTNDQHLDQP
201: AFDTVMRMKL YAESLARFQG TSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEGGKVIGVT SEGETAKCKK IVCDPSYLPN KVRKIGRVAR
301: AIAIMSHPIP NTNDSHSVQV IIPQKQLARK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELKPG TDLLGPVDEI FFDMYDRYEP VNEPELDNCF
401: ISTSYDATTH FETTVADVLN MYTLITGKQL DLSVDLSAAS AAEE
101: FKAVDGSYVF VKGKVQKVPA TPMEALKSSL MGIFEKRRAG KFFSFVQEYD EKDPKTHDGM DLTRVTTKEL IAKYGLDGNT IDFIGHAVAL HTNDQHLDQP
201: AFDTVMRMKL YAESLARFQG TSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEGGKVIGVT SEGETAKCKK IVCDPSYLPN KVRKIGRVAR
301: AIAIMSHPIP NTNDSHSVQV IIPQKQLARK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELKPG TDLLGPVDEI FFDMYDRYEP VNEPELDNCF
401: ISTSYDATTH FETTVADVLN MYTLITGKQL DLSVDLSAAS AAEE
Arabidopsis Description
GDI2Guanosine nucleotide diphosphate dissociation inhibitor [Source:UniProtKB/TrEMBL;Acc:A0A178VFJ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.