Factsheet for GSMUA_Achr7P02920_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	nucleus, peroxisome, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G059230.1	Barley	cytosol	27.45	39.44
KRH71651	Soybean	cytosol, nucleus, peroxisome	43.14	22.45
GSMUA_Achr9P03980_001	Banana	cytosol	64.71	14.8
GSMUA_Achr7P23620_001	Banana	cytosol	63.73	14.71
KRH49823	Soybean	cytosol, endoplasmic reticulum	62.75	14.38
KRH42088	Soybean	cytosol	62.75	14.38
Solyc01g105810.2.1	Tomato	cytosol, unclear	61.76	14.16
GSMUA_Achr10P...	Banana	cytosol	61.76	14.13
GSMUA_Achr10P...	Banana	cytosol	61.76	14.13
AT5G09550.1	Thale cress	cytosol	60.78	13.93
CDY56553	Canola	cytosol	59.8	13.71
CDY21587	Canola	cytosol	59.8	13.71
CDX81131	Canola	cytosol	59.8	13.71
Bra009390.1-P	Field mustard	cytosol	59.8	13.71
GSMUA_Achr6P18380_001	Banana	cytosol	59.8	13.65
GSMUA_Achr10P...	Banana	cytosol	56.86	13.06
Bra006026.1-P	Field mustard	cytosol	53.92	12.53
Bra028630.1-P	Field mustard	cytosol	59.8	9.95
CDY65664	Canola	cytosol	39.22	9.76
CDY44805	Canola	cytosol	59.8	9.7
KRH66563	Soybean	cytosol	33.33	6.1
GSMUA_Achr6P03390_001	Banana	peroxisome	14.71	3.05
CDX69899	Canola	cytosol	3.92	1.27
VIT_03s0017g00490.t01	Wine grape	cytosol	3.92	1.1
GSMUA_Achr7P02930_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	0.98	0.87

Protein Annotations

Gene3D:3.50.50.60	MapMan:35.1	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor	GO:GO:0003674	GO:GO:0005092
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	GO:GO:0030234	GO:GO:0050790	EnsemblPlantsGene:GSMUA_Achr7G02920_001	EnsemblPlants:GSMUA_Achr7P02920_001
EnsemblPlants:GSMUA_Achr7T02920_001	InterPro:IPR036188	UniProt:M0TE82	PFAM:PF00996	PRINTS:PR00891	PANTHER:PTHR11787
PANTHER:PTHR11787:SF10	SUPFAM:SSF51905	UniParc:UPI0002963B0E	:	:	:

Description

Rab GDP dissociation inhibitor beta [Source:GMGC_GENE;Acc:GSMUA_Achr7G02920_001]

Coordinates

chr7:+:2341144..2342779

Molecular Weight (calculated)

11443.9 Da

IEP (calculated)

6.779

GRAVY (calculated)

-0.088

Length

102 amino acids

Sequence
(BLAST)

001: MDKEYDVIVL GTGLKECILS GLPSVDGLKF LLLAKMFRVL HMDRNDYYRG ESTSLNLIQA RNINREQSIV HVPPALLGSS REYNVDMIPK VCSSSSHSTL
101: DM

Best Arabidopsis Sequence Match ( AT5G09550.1 )
(BLAST)

001: MDEEYDVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESSSLNLTQ LWKRFRGSDT PEENLGASRE YNVDMIPKFI MANGLLVQTL IHTDVTKYLN
101: FKAVDGSFVY KKGKIYKVPA TDVEALKSPL MGLFEKRRAR KFFIYVQDYD EKDPKSHEGL DLSKVTAREI ISKYGLEDDT IDFIGHALAL HNDDDYLDQP
201: AIDFVKRIKL YAESLARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DGSGKAIGVT SAGETAKCKK VVCDPSYLSE KVKKVGKVTR
301: AVCIMSHPIP DTNDAHSVQI ILPQKQLGRK SDMYLFCCSY AHNVAPKGKY IAFVSAEAET DNPEEELKPG IELLGPTDEI FYHSYDTYVP TNIQEEDNCF
401: ISATYDATTH FESTVVDVLD MYTKITGKTL DLSVDLSAAS AAAEN

Arabidopsis Description

Guanosine nucleotide diphosphate dissociation inhibitor At5g09550 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.