Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 5
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr2P15100_001 | |
| GSMUA_Achr3P19960_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G59920.1 | GSMUA_Achr3P19960_001 | AT1G14340.1 | 21798944 |
| AT3G59920.1 | GSMUA_Achr2P15100_001 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P18380_001 | Banana | cytosol | 94.57 | 93.51 |
| KXG22017 | Sorghum | cytosol | 90.05 | 89.44 |
| VIT_05s0094g01550.t01 | Wine grape | cytosol | 89.82 | 89.41 |
| KRH59137 | Soybean | endoplasmic reticulum | 89.82 | 89.41 |
| HORVU1Hr1G064490.8 | Barley | cytosol | 90.27 | 89.26 |
| Os05t0418000-01 | Rice | cytosol, extracellular, plasma membrane, plastid | 89.82 | 89.21 |
| KRH43030 | Soybean | cytosol, endoplasmic reticulum, nucleus | 89.59 | 89.19 |
| TraesCS1B01G271700.1 | Wheat | cytosol | 89.59 | 88.99 |
| TraesCS1D01G260900.1 | Wheat | cytosol, golgi | 89.59 | 88.99 |
| Solyc12g017570.1.1 | Tomato | plastid | 89.37 | 88.96 |
| EES18242 | Sorghum | cytosol | 89.37 | 88.76 |
| TraesCS1A01G260900.1 | Wheat | cytosol | 89.14 | 88.54 |
| TraesCS1A01G261000.1 | Wheat | cytosol | 89.14 | 88.34 |
| Os05t0304400-01 | Rice | plasma membrane | 88.91 | 88.31 |
| PGSC0003DMT400035649 | Potato | cytosol | 88.46 | 88.06 |
| TraesCS1B01G271800.2 | Wheat | cytosol, golgi | 88.69 | 87.89 |
| Solyc08g015860.2.1 | Tomato | extracellular | 88.24 | 87.84 |
| Zm00001d010255_P001 | Maize | cytosol, extracellular | 89.37 | 87.0 |
| GSMUA_Achr10P... | Banana | cytosol | 86.2 | 85.81 |
| CDX98399 | Canola | cytosol | 85.07 | 84.68 |
| CDX67817 | Canola | cytosol | 85.07 | 84.68 |
| CDY17885 | Canola | cytosol | 84.84 | 84.46 |
| CDX89038 | Canola | cytosol | 84.84 | 84.46 |
| CDX79782 | Canola | cytosol | 84.84 | 84.46 |
| Bra014523.1-P | Field mustard | cytosol | 84.84 | 84.46 |
| Bra004805.1-P | Field mustard | cytosol | 84.84 | 84.46 |
| Bra003395.1-P | Field mustard | cytosol | 84.84 | 84.46 |
| EER98346 | Sorghum | cytosol | 85.07 | 84.3 |
| TraesCS5A01G041100.1 | Wheat | cytosol | 84.84 | 84.27 |
| TraesCS5B01G042400.1 | Wheat | cytosol | 84.84 | 84.27 |
| CDY45775 | Canola | cytosol | 84.62 | 84.23 |
| GSMUA_Achr10P... | Banana | cytosol | 84.84 | 84.08 |
| AT3G59920.1 | Thale cress | cytosol | 84.39 | 84.01 |
| TraesCS5D01G048100.1 | Wheat | cytosol | 84.39 | 83.82 |
| Zm00001d010251_P003 | Maize | cytosol | 88.69 | 83.76 |
| Os07t0271000-01 | Rice | plasma membrane | 84.39 | 83.63 |
| AT2G44100.1 | Thale cress | cytosol | 83.94 | 83.37 |
| GSMUA_Achr10P... | Banana | cytosol | 83.94 | 83.18 |
| GSMUA_Achr9P03980_001 | Banana | cytosol | 83.48 | 82.74 |
| Bra007493.1-P | Field mustard | cytosol | 83.26 | 82.7 |
| CDY05962 | Canola | cytosol | 82.81 | 82.43 |
| HORVU1Hr1G064480.1 | Barley | cytosol | 82.13 | 81.39 |
| CDX71860 | Canola | cytosol | 74.89 | 80.93 |
| GSMUA_Achr7P02930_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 20.81 | 80.0 |
| Zm00001d007315_P001 | Maize | cytosol | 31.45 | 78.09 |
| Zm00001d005498_P001 | Maize | cytosol | 85.29 | 76.32 |
| Zm00001d038200_P002 | Maize | plastid | 87.33 | 75.98 |
| TraesCS1D01G261000.1 | Wheat | golgi | 89.14 | 75.48 |
| HORVU5Hr1G009840.1 | Barley | cytosol | 85.07 | 68.86 |
| GSMUA_Achr7P02920_001 | Banana | cytosol | 14.71 | 63.73 |
| Zm00001d009786_P001 | Maize | plastid | 45.93 | 59.18 |
| Zm00001d011867_P001 | Maize | cytosol | 47.29 | 57.1 |
| HORVU2Hr1G104740.2 | Barley | mitochondrion | 10.86 | 51.06 |
| HORVU7Hr1G075170.1 | Barley | mitochondrion | 12.67 | 50.91 |
| Zm00001d016318_P002 | Maize | cytosol | 32.58 | 50.88 |
| GSMUA_Achr6P03390_001 | Banana | peroxisome | 23.08 | 20.73 |
Protein Annotations
| Gene3D:1.10.405.10 | MapMan:22.8.4.2 | Gene3D:3.30.519.10 | Gene3D:3.50.50.60 | InterPro:FAD/NAD-bd_sf | InterPro:GDP_dissociation_inhibitor |
| GO:GO:0003674 | GO:GO:0005092 | GO:GO:0005093 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007264 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0015031 | GO:GO:0030234 | GO:GO:0050790 | EnsemblPlantsGene:GSMUA_Achr7G23620_001 | EnsemblPlants:GSMUA_Achr7P23620_001 | EnsemblPlants:GSMUA_Achr7T23620_001 |
| InterPro:IPR036188 | UniProt:M0TK48 | PFAM:PF00996 | PRINTS:PR00891 | PRINTS:PR00892 | PANTHER:PTHR11787 |
| PANTHER:PTHR11787:SF11 | InterPro:RabGDI | SUPFAM:SSF51905 | UniParc:UPI000294E49C | SEG:seg | : |
Description
Rab GDP dissociation inhibitor alpha [Source:GMGC_GENE;Acc:GSMUA_Achr7G23620_001]
Coordinates
chr7:+:25747924..25755883
Molecular Weight (calculated)
49582.3 Da
IEP (calculated)
5.796
GRAVY (calculated)
-0.283
Length
442 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEEYDVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESTSLNLLW KRFRGSDKPP AHLGASRDYN VDMIPKFMMA NGILVRTLIH TDVTKYLSFK
101: AVDGSYVFNK GKIHKVPATD MEALRSPLMG LFEKRRARKF FIYVQDYDEN DPKTHEGLDL TRVTTKELIS KYGLDDNTID FIGHALALHR DDRYLYEPAL
201: DTVKRMKLYS ESLARFQGGS PYIYPLYGLG ELPQAFARLS AVYGGTYMLN KPECKVEFDM EGKACGVTSE GETARCKKVV CDPSYLPNKV RKVGKVARAI
301: AIMSHPIPNT DESHSVQVIL PQKQLGRKSD MYLFCCSYSH NVAPKGKFIA FVSTEAETDR PDVELKPGID LLGPVDELFF ETYDRYEPVN EPSLDHCFIS
401: ASYDATTHFE STVTDVLSMY TMITGKTVDL SVDLSAASAA EE
101: AVDGSYVFNK GKIHKVPATD MEALRSPLMG LFEKRRARKF FIYVQDYDEN DPKTHEGLDL TRVTTKELIS KYGLDDNTID FIGHALALHR DDRYLYEPAL
201: DTVKRMKLYS ESLARFQGGS PYIYPLYGLG ELPQAFARLS AVYGGTYMLN KPECKVEFDM EGKACGVTSE GETARCKKVV CDPSYLPNKV RKVGKVARAI
301: AIMSHPIPNT DESHSVQVIL PQKQLGRKSD MYLFCCSYSH NVAPKGKFIA FVSTEAETDR PDVELKPGID LLGPVDELFF ETYDRYEPVN EPSLDHCFIS
401: ASYDATTHFE STVTDVLSMY TMITGKTVDL SVDLSAASAA EE
001: MDEEYEVIVL GTGLKECILS GLLSVDGVKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APEHLGASRD YNVDMMPKFM MGNGKLVRTL IHTDVTKYLS
101: FKAVDGSYVF VKGKVQKVPA TPMEALKSSL MGIFEKRRAG KFFSFVQEYD EKDPKTHDGM DLTRVTTKEL IAKYGLDGNT IDFIGHAVAL HTNDQHLDQP
201: AFDTVMRMKL YAESLARFQG TSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEGGKVIGVT SEGETAKCKK IVCDPSYLPN KVRKIGRVAR
301: AIAIMSHPIP NTNDSHSVQV IIPQKQLARK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELKPG TDLLGPVDEI FFDMYDRYEP VNEPELDNCF
401: ISTSYDATTH FETTVADVLN MYTLITGKQL DLSVDLSAAS AAEE
101: FKAVDGSYVF VKGKVQKVPA TPMEALKSSL MGIFEKRRAG KFFSFVQEYD EKDPKTHDGM DLTRVTTKEL IAKYGLDGNT IDFIGHAVAL HTNDQHLDQP
201: AFDTVMRMKL YAESLARFQG TSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEGGKVIGVT SEGETAKCKK IVCDPSYLPN KVRKIGRVAR
301: AIAIMSHPIP NTNDSHSVQV IIPQKQLARK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELKPG TDLLGPVDEI FFDMYDRYEP VNEPELDNCF
401: ISTSYDATTH FETTVADVLN MYTLITGKQL DLSVDLSAAS AAEE
Arabidopsis Description
GDI2Guanosine nucleotide diphosphate dissociation inhibitor [Source:UniProtKB/TrEMBL;Acc:A0A178VFJ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.