Factsheet for TraesCS1D01G261000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G521600.1
TraesCS2B01G551100.1
TraesCS2D01G523400.1
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59920.1	TraesCS2A01G521600.1	AT1G14340.1	21798944
AT3G59920.1	TraesCS2B01G551100.1	AT1G14340.1	21798944
AT3G59920.1	TraesCS2D01G523400.1	AT1G14340.1	21798944
AT3G59920.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT3G59920.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT3G59920.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G261000.1	Wheat	cytosol	85.06	99.55
TraesCS1B01G271800.2	Wheat	cytosol, golgi	84.29	98.65
Os05t0304400-01	Rice	plasma membrane	79.69	93.48
Os05t0418000-01	Rice	cytosol, extracellular, plasma membrane, plastid	79.31	93.03
HORVU1Hr1G064480.1	Barley	cytosol	79.12	92.6
KXG22017	Sorghum	cytosol	78.93	92.58
TraesCS1D01G260900.1	Wheat	cytosol, golgi	78.74	92.36
Zm00001d010255_P001	Maize	cytosol, extracellular	78.35	90.09
GSMUA_Achr7P23620_001	Banana	cytosol	75.48	89.14
Solyc12g017570.1.1	Tomato	plastid	73.75	86.71
GSMUA_Achr6P18380_001	Banana	cytosol	74.14	86.58
KRH43030	Soybean	cytosol, endoplasmic reticulum, nucleus	73.56	86.49
KRH59137	Soybean	endoplasmic reticulum	73.37	86.26
CDX98399	Canola	cytosol	72.61	85.36
CDX67817	Canola	cytosol	72.61	85.36
AT2G44100.1	Thale cress	cytosol	72.61	85.17
Bra003395.1-P	Field mustard	cytosol	72.41	85.14
PGSC0003DMT400035649	Potato	cytosol	72.41	85.14
Bra004805.1-P	Field mustard	cytosol	72.22	84.91
CDY17885	Canola	cytosol	72.22	84.91
CDX79782	Canola	cytosol	72.22	84.91
Solyc08g015860.2.1	Tomato	extracellular	72.22	84.91
CDY45775	Canola	cytosol	72.03	84.68
VIT_05s0094g01550.t01	Wine grape	cytosol	72.03	84.68
Bra014523.1-P	Field mustard	cytosol	71.84	84.46
CDX89038	Canola	cytosol	71.84	84.46
AT3G59920.1	Thale cress	cytosol	71.65	84.23
Bra007493.1-P	Field mustard	cytosol	71.07	83.37
CDY05962	Canola	cytosol	70.5	82.88
TraesCS5D01G048100.1	Wheat	cytosol	70.5	82.7
CDX71860	Canola	cytosol	63.22	80.68
GSMUA_Achr10P...	Banana	cytosol	68.39	80.41
TraesCS4D01G206900.1	Wheat	cytosol	68.39	79.87
TraesCS3D01G189700.1	Wheat	cytosol, nucleus, peroxisome	19.73	18.39

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.2	Gene3D:3.30.519.10	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor
GO:GO:0003674	GO:GO:0005092	GO:GO:0005093	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165
GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0030234	InterPro:IPR036188
PFAM:PF00996	PRINTS:PR00891	PRINTS:PR00892	PANTHER:PTHR11787	PANTHER:PTHR11787:SF11	InterPro:RabGDI
SUPFAM:SSF51905	SUPFAM:SSF54373	EnsemblPlantsGene:TraesCS1D01G261000	EnsemblPlants:TraesCS1D01G261000.1	SEG:seg	:

Description

No Description!

Coordinates

chr1D:+:355174195..355181168

Molecular Weight (calculated)

57863.2 Da

IEP (calculated)

5.962

GRAVY (calculated)

-0.284

Length

522 amino acids

Sequence
(BLAST)

001: MIYPQGPARE RDGSCCSPLS AIACASDFFR IPERQIPSPP PTAAPLSTPL LPTAVLRADP SRSPEPPRQA RREVAAMDEE YDVIVLGTGL KECILSGLLS
101: VDGLKVLHMD RNDYYGGDST SLNLNQLWKK FRGEDKPPAH LGSSKDYNVD MVPKFMMANG TLVRTLIHTN VTKYLSFKAV DGSFVFSKGK IHKVPATDME
201: ALKSPLMGLF EKRRARNFFI YVQNYDEADP KTHQGLDLTT LTTKELIAKY GLVDDTVDFI GHALALHRDD RHLNEPALDT VKRMKLYSES LARFQGGSPY
301: IYPLYGLGEL PQGFARLSAV YGGTYMLSKP ECKVEFDMEG KACGVTSEGE TAKCKKVVCD PSYLTNKVRK IGKVARAIAI MSHPIPNTNE SHSVQIILPQ
401: KQLGRNSDMY VFCCSYTHNV APKGKFIAFV SAEAESDNIQ SELKPGIDLL GPVDELFFDM YDRYEPVNEP SLDNCFISTS YDATTHFETT VTDVLNMYTM
501: ITGKTIDLSV DLSAASAAEE EY

Best Arabidopsis Sequence Match ( AT2G44100.1 )
(BLAST)

001: MDEEYEVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APAHLGSSRD YNVDMMPKFM MANGKLVRVL IHTDVTKYLS
101: FKAVDGSYVF VQGKVQKVPA TPMEALKSPL MGIFEKRRAG KFFSYVQEYD EKDPKTHDGM DLRRVTTKDL IAKFGLKEDT IDFIGHAVAL HCNDNHLHQP
201: AYDTVMRMKL YAESLARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEEGKVSGVT SEGETAKCKK VVCDPSYLTN KVRKIGRVAR
301: AIAIMSHPIP NTNDSQSVQV ILPQKQLGRK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELQPG IDLLGPVDEL FFDIYDRYEP VNEPTLDNCF
401: ISTSYDATTH FDTTVVDVLN MYKLITGKEL DLSVDLNAAS AAEEE

Arabidopsis Description

GDI1Guanosine nucleotide diphosphate dissociation inhibitor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.